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wgcna package
•
reset
1
vote
0
replies
1.2k
views
WGCNA trait order in heat map
wgcna
WGCNA
wgcna package
5.1 years ago
coyoung
▴ 10
0
votes
2
replies
3.5k
views
Module preservation WGCNA
wgcna
wgcna package
modulepreservation
updated 6.2 years ago by
Peter Langfelder
★ 3.0k • written 6.2 years ago by
bekah
▴ 40
0
votes
1
reply
2.2k
views
WGCNA: Matching eigengenes to samples
wgcna
wgcna package
6.2 years ago
Jack
• 0
0
votes
2
replies
1.5k
views
Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package
wgcna
6.3 years ago
anni.djurhuus
• 0
2
votes
3
replies
1.8k
views
Problem for finding "Locus Link ID" from Annotation file
wgcna package
TCGA
LocusLinkID
genecode
ensembl
updated 6.3 years ago by
James W. MacDonald
68k • written 6.4 years ago by
modarzi
▴ 10
0
votes
2
replies
3.7k
views
TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package
software error
updated 6.4 years ago by
Peter Langfelder
★ 3.0k • written 6.4 years ago by
giuseppe0525
• 0
0
votes
0
replies
1.3k
views
consensus module relationship
wgcna
wgcna package
consensus
6.4 years ago
2323982403
▴ 60
2
votes
4
replies
1.9k
views
Segfault error when loading WGCNA
wgcna
wgcna package
6.5 years ago • updated 6.4 years ago
antoinefelden
▴ 10
2
votes
2
replies
5.8k
views
WGCNA extract genes from a module
WGCNA
wgcna package
updated 6.5 years ago by
Peter Langfelder
★ 3.0k • written 6.5 years ago by
bdy8
▴ 10
1
vote
3
replies
1.6k
views
SampleNetwork in WGCNA
wgcna
wgcna package
6.5 years ago
2323982403
▴ 60
0
votes
0
replies
2.8k
views
Use of bicor in WGCNA
WGCNA
wgcna package
wgcna
bicor
6.5 years ago
bekah
▴ 40
12
votes
15
replies
20k
views
WGCNA: Understanding module-trait correlations
wgcna package
updated 6.6 years ago by
Peter Langfelder
★ 3.0k • written 6.6 years ago by
bekah
▴ 40
0
votes
0
replies
1.1k
views
problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq
WGCNA package
soft power
6.6 years ago
modarzi
▴ 10
13 results • Page
1 of 1
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Comment: DESeq2 It is correct to use interaction term for patient variability?
by
Bradley
• 0
I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…
Comment: Differential variance analysis - can i use deseq2
by
Michael Love
43k
VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…
Answer: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…
Comment: WGCNA
by
pammelala304
• 0
Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.
Comment: Does anyone have the command to download all of the core_nt using blast_db_get()
by
Matthew Thornton
▴ 380
Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…
Votes
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: normalizatino of dna methylation EPIC data
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Suggesting changing the "reply-to" field to the mailing list address.
Answer: UniProt.ws query for single UniRef90 ID takes several minutes
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