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WGCNA trait order in heat map
wgcna WGCNA wgcna package
5.2 years ago coyoung ▴ 10
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Module preservation WGCNA
wgcna wgcna package modulepreservation
written 6.4 years ago by ▴ 40
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WGCNA: Matching eigengenes to samples
wgcna wgcna package
6.4 years ago Jack • 0
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Using Kendall's Tau rank correlation coefficient for creating WGCNA network
wgcna package wgcna
6.5 years ago anni.djurhuus • 0
2
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3
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Problem for finding "Locus Link ID" from Annotation file
wgcna package TCGA LocusLinkID genecode ensembl
updated 6.5 years ago by 68k • written 6.5 years ago by ▴ 10
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TOMplot error: "color" is not a graphical parameter (WGCNA)
wgcna package software error
updated 6.6 years ago by ★ 3.0k • written 6.6 years ago by • 0
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consensus module relationship
wgcna wgcna package consensus
6.6 years ago 2323982403 ▴ 60
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4
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1.9k
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Segfault error when loading WGCNA
wgcna wgcna package
6.6 years ago antoinefelden ▴ 10
2
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2
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6.0k
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WGCNA extract genes from a module
WGCNA wgcna package
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by ▴ 10
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SampleNetwork in WGCNA
wgcna wgcna package
6.7 years ago 2323982403 ▴ 60
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Use of bicor in WGCNA
WGCNA wgcna package wgcna bicor
6.7 years ago bekah ▴ 40
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15
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WGCNA: Understanding module-trait correlations
wgcna package
updated 6.7 years ago by ★ 3.0k • written 6.7 years ago by ▴ 40
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problem for finding soft power for constructing network in WGCNA algorithm
RNA-seq WGCNA package soft power
6.8 years ago modarzi ▴ 10
13 results • Page 1 of 1
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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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