Bioconductor Watermelon

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697

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DNAMethylation wateRmelon Computation minfi

2.2 years ago calen.p.ryan • 0

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1.2k

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wateRmelon Illumina EPIC pfilter

updated 5.0 years ago by lschal • 0 • written 5.0 years ago by anne-kristin.stavrum • 0

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1.8k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 5.2 years ago by tgorri ▴ 10 • written 5.2 years ago by sara.blocquiaux • 0

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1.3k

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methylation ENmix BMIQ wateRmelon

5.7 years ago moldach ▴ 20

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1.6k

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minfi methylumi watermelon

7.8 years ago Tom ▴ 10

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2.5k

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wateRmelon methylation EPIC normalization

7.8 years ago Wade Davis ▴ 60

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1.6k

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limma watermelon methylumi bmiq

updated 7.9 years ago by tgorri ▴ 10 • written 7.9 years ago by poojitha.stemcell ▴ 10

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2.0k

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minfi watermelon cancer 450k normalization

updated 9.3 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.3 years ago by metamaden ▴ 10

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2.3k

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watermelon betaqn pfilter getProbeInfo minfi

9.7 years ago gctromp ▴ 10

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2.5k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 11.0 years ago by Tim Triche ★ 4.2k • written 11.0 years ago by Martin Rijlaarsdam ▴ 190

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Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

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Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k