Bioconductor Watermelon

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709

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DNAMethylation wateRmelon Computation minfi

2.3 years ago calen.p.ryan • 0

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1.2k

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wateRmelon Illumina EPIC pfilter

updated 5.0 years ago by lschal • 0 • written 5.0 years ago by anne-kristin.stavrum • 0

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1.8k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 5.2 years ago by tgorri ▴ 10 • written 5.2 years ago by sara.blocquiaux • 0

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1.3k

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methylation ENmix BMIQ wateRmelon

5.8 years ago • updated 5.7 years ago moldach ▴ 20

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1.7k

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minfi methylumi watermelon

7.8 years ago Tom ▴ 10

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2.5k

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wateRmelon methylation EPIC normalization

7.9 years ago Wade Davis ▴ 60

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1.6k

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limma watermelon methylumi bmiq

updated 7.9 years ago by tgorri ▴ 10 • written 7.9 years ago by poojitha.stemcell ▴ 10

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2.0k

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minfi watermelon cancer 450k normalization

updated 9.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.4 years ago by metamaden ▴ 10

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2.3k

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watermelon betaqn pfilter getProbeInfo minfi

9.8 years ago gctromp ▴ 10

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2.5k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 11.0 years ago by Tim Triche ★ 4.2k • written 11.1 years ago by Martin Rijlaarsdam ▴ 190

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

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A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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