Bioconductor WateRmelon

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836

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DNAMethylation wateRmelon Computation minfi

2.7 years ago calen.p.ryan • 0

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1.5k

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wateRmelon Illumina EPIC pfilter

updated 5.4 years ago by lschal • 0 • written 5.4 years ago by anne-kristin.stavrum • 0

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2.0k

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wateRmelon minfi methylation pfilter preprocessNoob

updated 5.6 years ago by tgorri ▴ 10 • written 5.6 years ago by sara.blocquiaux • 0

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1.4k

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methylation ENmix BMIQ wateRmelon

6.2 years ago • updated 6.1 years ago moldach ▴ 20

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1.8k

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minfi methylumi watermelon

8.2 years ago Tom ▴ 10

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2.7k

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wateRmelon methylation EPIC normalization

8.2 years ago Wade Davis ▴ 60

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1.8k

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limma watermelon methylumi bmiq

updated 8.3 years ago by tgorri ▴ 10 • written 8.3 years ago by poojitha.stemcell ▴ 10

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2.2k

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minfi watermelon cancer 450k normalization

updated 9.7 years ago by Kasper Daniel Hansen ★ 6.5k • written 9.7 years ago by metamaden ▴ 10

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2.5k

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watermelon betaqn pfilter getProbeInfo minfi

10.2 years ago gctromp ▴ 10

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2.7k

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convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon

updated 11.4 years ago by Tim Triche ★ 4.2k • written 11.4 years ago by Martin Rijlaarsdam ▴ 190

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Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

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annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

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Popular Question to Ariel Chernomoretz ▴ 170