Bioconductor Vranges

Showing : vranges • reset

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860

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somaticsignatures vranges readvcfasvranges

6.2 years ago guillaume.dachy • 0

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1.9k

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variantannotation vcf readvcf vranges

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by david.mas • 0

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1.4k

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variantannotation VRanges R Rle

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by Jayendra Shinde • 0

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1.9k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

7.3 years ago • updated 7.2 years ago guillaume.dachy • 0

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1.5k

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vranges vcf to vranges

7.8 years ago Bogdan ▴ 670

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2.0k

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somaticsignatures vranges

updated 8.4 years ago by Julian Gehring ★ 1.3k • written 8.4 years ago by arsala521 ▴ 10

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1.7k

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granges vranges readvcfasvranges somaticsignatures

updated 8.6 years ago by Michael Lawrence ★ 11k • written 8.6 years ago by jpluta26 • 0

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2.3k

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SomaticSignatures mutationContext VRanges

updated 9.2 years ago by Julian Gehring ★ 1.3k • written 9.2 years ago by tesa.severson ▴ 10

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2.5k

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variantannotation vranges readvcf readvcfasvranges metadata

9.7 years ago summerela • 0

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3.4k

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variantannotation granges DNAStringSetList findoverlaps Vranges

9.7 years ago summerela • 0

10 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

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Popular Question to Guido Hooiveld ★ 4.1k