Bioconductor Vranges

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somaticsignatures vranges readvcfasvranges

6.6 years ago guillaume.dachy • 0

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2.1k

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variantannotation vcf readvcf vranges

updated 6.8 years ago by Michael Lawrence ★ 11k • written 6.8 years ago by david.mas • 0

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1.5k

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variantannotation VRanges R Rle

updated 6.8 years ago by Valerie Obenchain ★ 6.8k • written 6.8 years ago by Jayendra Shinde • 0

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2.0k

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somaticsignatures somaticsignatures package readvcfasvranges vranges

7.7 years ago • updated 7.6 years ago guillaume.dachy • 0

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1.6k

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vranges vcf to vranges

8.3 years ago Bogdan ▴ 670

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2.2k

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somaticsignatures vranges

updated 8.8 years ago by Julian Gehring ★ 1.3k • written 8.8 years ago by arsala521 ▴ 10

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1.8k

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granges vranges readvcfasvranges somaticsignatures

updated 9.0 years ago by Michael Lawrence ★ 11k • written 9.0 years ago by jpluta26 • 0

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SomaticSignatures mutationContext VRanges

updated 9.6 years ago by Julian Gehring ★ 1.3k • written 9.6 years ago by tesa.severson ▴ 10

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2.7k

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variantannotation vranges readvcf readvcfasvranges metadata

10.1 years ago summerela • 0

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3.6k

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.1 years ago summerela • 0

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Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Answer: Having Trouble Using CNE12() and CNE21() in CNEr by 1324087964 • 0

![enter image description here][1] [1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

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Answer: Improving performance of edgeR and limma while adjusting for multiple confounder

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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