Bioconductor Vranges

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somaticsignatures vranges readvcfasvranges

6.2 years ago guillaume.dachy • 0

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variantannotation vcf readvcf vranges

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by david.mas • 0

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variantannotation VRanges R Rle

updated 6.4 years ago by Valerie Obenchain ★ 6.8k • written 6.4 years ago by Jayendra Shinde • 0

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somaticsignatures somaticsignatures package readvcfasvranges vranges

7.3 years ago • updated 7.2 years ago guillaume.dachy • 0

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1.5k

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vranges vcf to vranges

7.9 years ago Bogdan ▴ 670

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somaticsignatures vranges

updated 8.4 years ago by Julian Gehring ★ 1.3k • written 8.4 years ago by arsala521 ▴ 10

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1.7k

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granges vranges readvcfasvranges somaticsignatures

updated 8.7 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by jpluta26 • 0

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SomaticSignatures mutationContext VRanges

updated 9.2 years ago by Julian Gehring ★ 1.3k • written 9.2 years ago by tesa.severson ▴ 10

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2.5k

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variantannotation vranges readvcf readvcfasvranges metadata

9.8 years ago summerela • 0

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3.4k

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variantannotation granges DNAStringSetList findoverlaps Vranges

9.8 years ago summerela • 0

10 results • Page 1 of 1

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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0

This makes a lot of sense, thank you very much!

Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0

Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…

Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k

Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…

Comment: Handling Epic Array Data by Melisa Tecik • 0

Thanks a lot for the help. You saved my day

Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k

The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…

Votes

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

Answer: Differene between the Wald and LRT test for time-series gene expression data

Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela

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