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Versions Update BindingSiteFinder

updated 2.0 years ago by Mike Smith ★ 6.6k • written 2.0 years ago by M.Klostermann • 0

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DiffBind Bioconda Versions

3.3 years ago Riba Michela ▴ 90

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versions BiocVersion dependencies

updated 3.9 years ago by shepherl 4.1k • written 3.9 years ago by sohitmiglani • 0

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reproducibility versions installing base-r

updated 4.9 years ago by Mike Smith ★ 6.6k • written 4.9 years ago by Yannick Wurm ▴ 40

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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