Bioconductor Version

Showing : version • reset

votes

replies

1.4k

views

version PureCN

updated 5.0 years ago by Mike Smith ★ 6.6k • written 5.0 years ago by twtoal ▴ 10

votes

replies

3.2k

views

version

updated 5.0 years ago by shepherl 4.1k • written 5.0 years ago by efratushava • 0

votes

replies

809

views

update new release version

5.2 years ago zzrickli • 0

votes

replies

1.7k

views

deseq2 outliers version

updated 6.7 years ago by Michael Love 42k • written 6.7 years ago by aec ▴ 90

votes

replies

5.9k

views

software error package installation version

updated 6.9 years ago by Martin Morgan 25k • written 6.9 years ago by syxxcenshi • 0

votes

1.3k

views

deseq2 version multiple factor design

updated 7.3 years ago by Gavin Kelly ▴ 690 • written 7.3 years ago by maksims.fiosins • 0

votes

replies

1.9k

views

version

updated 9.5 years ago by Marc Carlson ★ 7.2k • written 9.5 years ago by msp.cse • 0

votes

replies

1.7k

views

version release library

updated 9.7 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.7 years ago by Malcolm Cook ★ 1.6k

8 results • Page 1 of 1

Recent ...

Replies

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Comment: ANOVA like approach of edgeR by SamGG ▴ 350

Simply remove the cell type from the model. design <- model.matrix(~targets$Status)

Answer: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

You could try the followings: > design <- model.matrix(~ 0 + group) > contrast <- makeContrasts(PvsL = 0.5*(L.pregnant + B.pregnan…

Answer: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael, so is there a way to work around this issue? Can I somehow make sure I can remove this batch effects without overcorrecti…

Votes

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

A: TopGO: How to retrieve the gene list related to a GO ID ?

Awards • All