Bioconductor Variantfiltering

Showing : variantfiltering • reset

votes

replies

904

views

VariantAnnotation VariantFiltering

16 months ago Bogdan ▴ 670

votes

593

views

VariantFiltering

updated 19 months ago by Robert Castelo ★ 3.4k • written 19 months ago by Andrew Beggs ▴ 90

votes

2.1k

views

RNAseq123 VariantFiltering Alignment VariantAnnotation

updated 2.2 years ago by James W. MacDonald 67k • written 2.3 years ago by Mohamed ▴ 30

votes

replies

1.6k

views

bioconductor variantfiltering

7.5 years ago • updated 7.4 years ago Claus.Hultschig • 0

votes

replies

1.7k

views

variantannotation variantfiltering

updated 7.9 years ago by Michael Lawrence ★ 11k • written 7.9 years ago by Bogdan ▴ 670

votes

1.3k

views

VariantFiltering

9.5 years ago claire.simpson • 0

votes

replies

1.7k

views

sequencing transcription variantfiltering annotation News

9.6 years ago Matthew Ritchie ▴ 1000

vote

1.5k

views

variantfiltering phastcons

updated 9.8 years ago by Robert Castelo ★ 3.4k • written 9.8 years ago by Stefanie Tauber ▴ 40

votes

replies

1.9k

views

VariantFiltering VariantFiltering

10.7 years ago Robert Castelo ★ 3.4k

9 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 analysis with transcript counts by kahunroleh • 0

Thanks for sharing the solution. I also face this problem.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by kahunroleh • 0

Yes, you can perform DEG analysis across two batches with one shared sample by using batch correction methods like ComBat or limma. These t…

Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Votes

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

Awards • All