Showing : variancepartition • reset
0
votes
0
replies
162
views
Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
limma variancePartition
8 weeks ago GJ • 0
0
votes
2
replies
549
views
sva: get a sv for RIN scores
limma sva variancePartition voom RNASeq
updated 3 months ago by 52k • written 3 months ago by ▴ 10
0
votes
9
replies
1.1k
views
Differential Expression Genes as Independent Variables
limma DifferentialExpression variancePartition dream
updated 3 months ago by 68k • written 3 months ago by • 0
1
vote
3
replies
540
views
makeContrastsDream for Interaction
limma DifferentialExpression variancePartition dream
4 months ago • updated 3 months ago abadgerw • 0
0
votes
5
replies
784
views
Merge Replicates vs Mixed Model
limma DifferentialExpression variancePartition dream
4 months ago • updated 3 months ago abadgerw • 0
2
votes
9
replies
995
views
Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multiple Tissues and Patients
edgeR variancePartition
updated 6 months ago by 52k • written 6 months ago by • 0
1
vote
2
replies
651
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
10 months ago Le • 0
1
vote
4
replies
1.7k
views
BiocParallel serialization errors on Windows
variancePartition BiocParallel
15 months ago hayleyw • 0
1
vote
7
replies
1.4k
views
DuplicateCorrelation() block by duplicate sample or by cell line ?
variancePartition RNASeqData limma BulkRNAseq RNASeq
updated 15 months ago by 52k • written 17 months ago by • 0
0
votes
9
replies
1.5k
views
How long does it usually take to complete dream() from start to finish?
variancePartition mixedmodel dream
18 months ago hayleyw • 0
1
vote
5
replies
2.3k
views
How many parameters should be included in the model design for deseq2?
DESeq2 variancePartition
23 months ago • updated 22 months ago Weiqian ▴ 10
1
vote
4
replies
1.1k
views
Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq variancePartition edgeR dream
24 months ago DH • 0
0
votes
5
replies
1.4k
views
Semi-technical replicates and voom sample weights
variancePa variancePartition limma-voom dream
updated 2.0 years ago by 52k • written 2.0 years ago by • 0
0
votes
0
replies
658
views
Argument is of length zero in variancePartition/Dream
expression variancePartition edgeR
2.6 years ago Jonathan • 0
1
vote
1
reply
1.7k
views
Repeated measures RNAseq analysis (edgeR or limma-voom)
edgeR limma variancePartition
updated 3.6 years ago by 52k • written 3.6 years ago by • 0
1
vote
3
replies
1.6k
views
limma - contrast matrix hypothesis testing
limma variancePartition
updated 3.7 years ago by 52k • written 3.7 years ago by ▴ 30
1
vote
0
replies
1.1k
views
What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition limma
3.9 years ago Junghoon ▴ 10
0
votes
1
reply
1.4k
views
Error while running variancePartition::dream()
variancePartition limma BiocParallel
3.9 years ago Junghoon ▴ 10
0
votes
1
reply
1.4k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel limma variancePartition
3.9 years ago • updated 3.7 years ago Junghoon ▴ 10
9
votes
11
replies
3.2k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 5.4 years ago by 52k • written 5.4 years ago by ▴ 20
3
votes
8
replies
2.1k
views
Results from variancePartition not matching those from lme4
variancepartition lme4 mixedmodel
updated 5.4 years ago by ▴ 170 • written 5.5 years ago by • 0
4
votes
3
replies
2.5k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma voom variancePartition dream
updated 5.4 years ago by ▴ 170 • written 5.7 years ago by ▴ 50
22 results • Page 1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Comment: orgDB by jenniferping36 • 0
Thanks for the suggestion! I'll check out the resources.
Comment: sesameDataCache is not work properly on my system by Samreen • 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
Awards • All
Popular Question to Gordon Smyth 52k
Popular Question to AB ▴ 110
Popular Question to Lluís Revilla Sancho ▴ 760
Popular Question to tifaGis • 0
Popular Question to Theo ▴ 10
Locations • All
Austria, 5 minutes ago
Poland, 36 minutes ago
Germany, 43 minutes ago
United Kingdom, 1 hour ago
India, 1 hour ago
Traffic: 997 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6