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variancePartition
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0
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162
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makeContrastsDream for Interaction
limma
DifferentialExpression
variancePartition
dream
12 days ago • updated 6 days ago
abadgerw
• 0
0
votes
1
reply
270
views
Merge Replicates vs Mixed Model
limma
DifferentialExpression
variancePartition
dream
12 days ago • updated 6 days ago
abadgerw
• 0
2
votes
9
replies
783
views
Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multiple Tissues and Patients
edgeR
variancePartition
updated 11 weeks ago by
Gordon Smyth
51k • written 12 weeks ago by
Seymoo
• 0
1
vote
2
replies
519
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
7 months ago
Le
• 0
1
vote
4
replies
1.4k
views
BiocParallel serialization errors on Windows
variancePartition
BiocParallel
11 months ago
hayleyw
• 0
1
vote
7
replies
1.2k
views
DuplicateCorrelation() block by duplicate sample or by cell line ?
variancePartition
RNASeqData
limma
BulkRNAseq
RNASeq
updated 11 months ago by
Gordon Smyth
51k • written 13 months ago by
Gimena
• 0
0
votes
9
replies
1.3k
views
How long does it usually take to complete dream() from start to finish?
variancePartition
mixedmodel
dream
15 months ago
hayleyw
• 0
1
vote
5
replies
2.0k
views
How many parameters should be included in the model design for deseq2?
DESeq2
variancePartition
20 months ago • updated 19 months ago
Weiqian
▴ 10
1
vote
4
replies
959
views
Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq
variancePartition
edgeR
dream
20 months ago
DH
• 0
0
votes
5
replies
1.3k
views
Semi-technical replicates and voom sample weights
variancePa
variancePartition
limma-voom
dream
updated 20 months ago by
Gordon Smyth
51k • written 21 months ago by
Le
• 0
0
votes
0
replies
586
views
Argument is of length zero in variancePartition/Dream
expression
variancePartition
edgeR
2.3 years ago
Jonathan
• 0
1
vote
1
reply
1.5k
views
Repeated measures RNAseq analysis (edgeR or limma-voom)
edgeR
limma
variancePartition
updated 3.3 years ago by
Gordon Smyth
51k • written 3.3 years ago by
jackgisby
• 0
1
vote
3
replies
1.5k
views
limma - contrast matrix hypothesis testing
limma
variancePartition
updated 3.4 years ago by
Gordon Smyth
51k • written 3.4 years ago by
jarod
▴ 30
1
vote
0
replies
979
views
What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition
limma
3.6 years ago
Junghoon
▴ 10
0
votes
1
reply
1.3k
views
Error while running variancePartition::dream()
variancePartition
limma
BiocParallel
3.6 years ago
Junghoon
▴ 10
0
votes
1
reply
1.3k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel
limma
variancePartition
3.6 years ago • updated 3.4 years ago
Junghoon
▴ 10
9
votes
11
replies
2.9k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream
variancePartition
limma
differential expression
repeated measures
updated 5.1 years ago by
Gordon Smyth
51k • written 5.1 years ago by
hermidalc
▴ 20
3
votes
8
replies
1.9k
views
Results from variancePartition not matching those from lme4
variancepartition
lme4
mixedmodel
updated 5.1 years ago by
gabriel.hoffman
▴ 160 • written 5.2 years ago by
c.taylor
• 0
4
votes
3
replies
2.2k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma
voom
variancePartition
dream
updated 5.1 years ago by
gabriel.hoffman
▴ 160 • written 5.4 years ago by
Ben
▴ 50
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
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https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
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https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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