Showing : variancePartition • reset
0
votes
0
replies
183
views
Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
limma variancePartition
11 weeks ago GJ • 0
0
votes
2
replies
584
views
sva: get a sv for RIN scores
limma sva variancePartition voom RNASeq
updated 3 months ago by 52k • written 3 months ago by ▴ 10
0
votes
9
replies
1.2k
views
Differential Expression Genes as Independent Variables
limma DifferentialExpression variancePartition dream
updated 3 months ago by 68k • written 4 months ago by • 0
1
vote
3
replies
572
views
makeContrastsDream for Interaction
limma DifferentialExpression variancePartition dream
4 months ago abadgerw • 0
0
votes
5
replies
844
views
Merge Replicates vs Mixed Model
limma DifferentialExpression variancePartition dream
4 months ago abadgerw • 0
2
votes
9
replies
1.0k
views
Seeking Advice on Using edgeR and variancePartition for RNA-seq Data from Multiple Tissues and Patients
edgeR variancePartition
updated 7 months ago by 52k • written 7 months ago by • 0
1
vote
2
replies
688
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
11 months ago Le • 0
1
vote
4
replies
1.8k
views
BiocParallel serialization errors on Windows
variancePartition BiocParallel
15 months ago hayleyw • 0
1
vote
7
replies
1.4k
views
DuplicateCorrelation() block by duplicate sample or by cell line ?
variancePartition RNASeqData limma BulkRNAseq RNASeq
updated 16 months ago by 52k • written 18 months ago by • 0
0
votes
9
replies
1.6k
views
How long does it usually take to complete dream() from start to finish?
variancePartition mixedmodel dream
19 months ago hayleyw • 0
1
vote
5
replies
2.5k
views
How many parameters should be included in the model design for deseq2?
DESeq2 variancePartition
2.0 years ago • updated 23 months ago Weiqian ▴ 10
1
vote
4
replies
1.1k
views
Repeated Measures-Cross Over Study for RNAseq data using variancePartition::dream
RNAseq variancePartition edgeR dream
2.1 years ago DH • 0
0
votes
5
replies
1.5k
views
Semi-technical replicates and voom sample weights
variancePa variancePartition limma-voom dream
updated 2.1 years ago by 52k • written 2.1 years ago by • 0
0
votes
0
replies
670
views
Argument is of length zero in variancePartition/Dream
expression variancePartition edgeR
2.6 years ago Jonathan • 0
1
vote
1
reply
1.7k
views
Repeated measures RNAseq analysis (edgeR or limma-voom)
edgeR limma variancePartition
updated 3.7 years ago by 52k • written 3.7 years ago by • 0
1
vote
3
replies
1.6k
views
limma - contrast matrix hypothesis testing
limma variancePartition
updated 3.8 years ago by 52k • written 3.8 years ago by ▴ 30
1
vote
0
replies
1.1k
views
What are cov.coefficients and cov.coefficients.list returned by dream()?
variancePartition limma
3.9 years ago Junghoon ▴ 10
0
votes
1
reply
1.5k
views
Error while running variancePartition::dream()
variancePartition limma BiocParallel
3.9 years ago Junghoon ▴ 10
0
votes
1
reply
1.4k
views
Excessive memory requirement of variancePartition::dream()
BiocParallel limma variancePartition
3.9 years ago • updated 3.8 years ago Junghoon ▴ 10
9
votes
11
replies
3.2k
views
dream vignette says limma-voom repeated measures two-group comparison needs two duplicateCorrelation rounds which differs from limma user's guide and…
dream variancePartition limma differential expression repeated measures
updated 5.5 years ago by 52k • written 5.5 years ago by ▴ 20
3
votes
8
replies
2.2k
views
Results from variancePartition not matching those from lme4
variancepartition lme4 mixedmodel
updated 5.5 years ago by ▴ 170 • written 5.6 years ago by • 0
4
votes
3
replies
2.6k
views
Blocking factor in limma/voom vs. variancePartition/dream analysis.
limma voom variancePartition dream
updated 5.5 years ago by ▴ 170 • written 5.8 years ago by ▴ 50
22 results • Page 1 of 1
Recent ...
Replies
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage by Albert • 0
great and very nice
Comment: European Bioconductor Conference 2023 planning by Pandora • 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
Comment: Generalized edgeR functions by bukarimanches • 0
I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by Morse • 0
[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
Awards • All
Scholar to Michael Love 43k
Popular Question to Rob • 0
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Popular Question to Le • 0
Locations • All
United States, 10 minutes ago
United States, 11 minutes ago
Italy, 17 minutes ago
United States, 42 minutes ago
Canada, 44 minutes ago
Traffic: 840 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6