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vanillaice
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Where is 'constructOligoSetFrom' or 'constructOligoSetListFrom' function?
crlmm
vanillaice
9.4 years ago
Shi, Tao
▴ 720
0
votes
4
replies
1.6k
views
Trouble following the first 5 lines of vanillaICE tutorial?
SNP6
crlmm
vanillaice
vanillaice crlmm
cnv
updated 9.5 years ago by
rscharpf
• 0 • written 9.5 years ago by
cafelumiere12
▴ 20
0
votes
0
replies
1.2k
views
Copy number analysis
SNP
affy
VanillaICE
SNP
affy
VanillaICE
12.7 years ago
Rob Scharpf
▴ 250
0
votes
2
replies
1.3k
views
VanillaICE
Proteomics
VanillaICE
Proteomics
VanillaICE
updated 13.0 years ago by
Valerie Obenchain
★ 6.8k • written 13.0 years ago by
Francesco Mancuso
▴ 110
0
votes
0
replies
1.2k
views
Annotation for Mouse Affy SNP arrays (MOUSEDIVm520650)?
Annotation
Cancer
VanillaICE
crlmm
Annotation
Cancer
VanillaICE
crlmm
13.2 years ago
Daniel Rico
▴ 110
0
votes
0
replies
1.4k
views
Question about using oligo and SNPchip for copy number analysis
SNP
Cancer
graph
oligo
SNPchip
oligoClasses
VanillaICE
crlmm
SNP
Cancer
graph
oligo
15.5 years ago
Min-Han Tan
▴ 40
0
votes
4
replies
1.7k
views
Creating a new instance of oligoSnpSet
Annotation
Cancer
Breast
VanillaICE
copynumber
Annotation
Cancer
Breast
VanillaICE
16.0 years ago
Steven McKinney
▴ 310
7 results • Page
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> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
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Gordon Smyth
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You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
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GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix?
by
NB
• 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix?
by
James W. MacDonald
67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
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Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
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