Bioconductor Update

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756

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Versions Update BindingSiteFinder

updated 2.1 years ago by Mike Smith ★ 6.6k • written 2.1 years ago by M.Klostermann • 0

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1.6k

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update Omixer maintainer

updated 4.2 years ago by shepherl 4.1k • written 4.2 years ago by l.j.sinke • 0

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1.7k

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software error packages update

updated 4.6 years ago by James W. MacDonald 68k • written 4.6 years ago by bs14ab • 0

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3.5k

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biocmanager valid update packages

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by bs14ab • 0

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863

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update new release version

5.4 years ago zzrickli • 0

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2.5k

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biocLite update all default ask

updated 6.0 years ago by Fischer-philipp ▴ 30 • written 6.0 years ago by rgiannico ▴ 10

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1.4k

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PANTHER.db update annotation go

updated 6.0 years ago by Martin Morgan 25k • written 6.0 years ago by alfonsosaera • 0

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953

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support.bioconductor.org update News

6.1 years ago shepherl 4.1k

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1.0k

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bioclite package installation update

8.0 years ago Malcolm Cook ★ 1.6k

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2.2k

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installation update

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by debg • 0

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7.3k

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bioconductor biocupgrade upgrade update bioclite

8.8 years ago enricoferrero ▴ 680

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6.8k

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deseq2 update

10.1 years ago zshao1 • 0

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5.8k

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update bioclite

updated 10.3 years ago by Dan Tenenbaum ★ 8.2k • written 10.3 years ago by dianmante • 0

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1.8k

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experimentdata update

updated 10.4 years ago by Laurent Gatto 1.6k • written 10.4 years ago by paul.theodor.pyl ▴ 10

14 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

Votes

A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to maltethodberg ▴ 180