Bioconductor Unsupervised

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batch effect unsupervised

updated 6.6 years ago by James W. MacDonald 68k • written 6.6 years ago by kentfung ▴ 20

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pheatmap unsupervised

updated 9.1 years ago by Michael Love 43k • written 9.1 years ago by jarod_v6@libero.it ▴ 40

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Answer: compute_fasta_digest does not match Salmon index hash by Michael Love 43k

Can you provide more details on when this is happening? The salmon index is the definitive hash associated with the quant files, so I'm con…

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k

Oh wait. You want to map from Ensembl to NCBI? That's hard to do with model organisms, let alone non-model. This `OrgDb` doesn't have Ensem…

Answer: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species by James W. MacDonald 68k

You can use the `AnnotationHub` ``` > library(AnnotationHub) > hub <- AnnotationHub() |===========================| 100% sna…

Answer: List of Deprecated Packages for Bioc3.20 by shepherl 4.1k

HTqPCR has been fixed and will be re-instated in 3.21

Comment: Question about using LRT test for time course experiments with DESeq2 by Rob • 0

Just to pick up on this thread as its really helpful for understanding the LRT test. The LRT test is given any genes that change within the…

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Scholar to Michael Love 43k