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DESeq2 - Design for TCGA unpaired RNAseq data
DESeq2
design
TCGA
unpaired
RNAseq
updated 7.0 years ago by
Michael Love
43k • written 7.0 years ago by
Talip
▴ 10
1
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6
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3.7k
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Limma: advice needed for best approach for joint paired and unpaired analyses in unbalanced intervention study
limma
paired
unpaired
duplicateCorrelation
updated 10.2 years ago by
bcbio_uk
▴ 10 • written 10.2 years ago by
Guido Hooiveld
★ 4.1k
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Comment: MBDseq analysis using qsea package
by
Lukas
▴ 20
Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…
Comment: DESeq2 analysis with transcript counts
by
sindhuri
• 0
Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…
Comment: Paired analysis in proteomics data for DE while interested in only a particular
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Answer: Issue carrying out DiffBind Analysis at a predefined peak set
Answer: Differential variability modelling with vst() expression
Answer: Differential variability modelling with vst() expression
Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
Answer: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu
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