Showing : tximportdata • reset
4
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5
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562
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DESeq Input from Salmon + tximport/tximeta
tximportData summarizeToGene tximport DESeq2 salmon
16 days ago • updated 15 days ago LuciaNhu • 0
0
votes
4
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567
views
Create count matrix from multible quant sf files from different directories
tximportData tximport salmon
5 months ago JG13 • 0
2
votes
9
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1.7k
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Importing RSEM processed data already formatted as a summarized experiment into DESeq2
tximport tximportData DESeq2
16 months ago Ndimensional ▴ 20
0
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2
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903
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tximport error in reading salmon output files?
tximport tximportData
updated 9 months ago by • 0 • written 17 months ago by • 0
2
votes
3
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1.6k
views
Error while reading rsem files in tximport
DESeq2 tximport rsem RNASeq tximportData
24 months ago • updated 23 months ago mohammedtoufiq91 ▴ 10
3
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3
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1.3k
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What is the correct way to import transcript abundances from 3' Quantseq results that calculated by kallisto?
tximport tximportData Quantseq kallisto
2.1 years ago • updated 2.0 years ago duhwa.lee • 0
0
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4
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1.4k
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Alternative for wininet method in tximeta
DESeq2 tximport tximportData tximeta
2.4 years ago uhlkatie • 0
2
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3
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1.2k
views
Import RSEM output without sample data
DESeq2 tximportData tximport
updated 2.8 years ago by 42k • written 2.8 years ago by • 0
0
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3
replies
1.1k
views
tximport fails when RSEM output options produce files with additional columns?
DESeq2 tximportData tximpor
updated 3.4 years ago by 42k • written 3.4 years ago by • 0
0
votes
1
reply
997
views
Multi-factor Analysis in DeSEQ2
tximport R tximportData RNASeq DESeq2
updated 3.5 years ago by 42k • written 3.5 years ago by • 0
0
votes
7
replies
2.0k
views
Problem with Tximport
tximportData tximport
3.8 years ago agoesmartini • 0
0
votes
1
reply
1.1k
views
How to use tx import on output of abundance file
tximportData tximport
updated 4.0 years ago by ★ 4.0k • written 4.0 years ago by • 0
0
votes
4
replies
1.4k
views
Having a hard time creating a Txi object from an existing Salmon output file to convert transcript file to gene id TPM
Salmon tximport tximportdata ensembl
updated 4.6 years ago by 42k • written 4.6 years ago by • 0
1
vote
2
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1.2k
views
What is the expected location of bootstrap samples relative to quant.sf file ?
tximport tximportdata salmon
6.1 years ago fcuy047 • 0
1
vote
2
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1.3k
views
trouble importing data for DEseq2 workflow
deseq2 tximport tximportdata pasilla Tutorial
updated 6.1 years ago by 42k • written 6.1 years ago by • 0
1
vote
8
replies
35k
views
How to create tx2gene.gencode.v27.csv
tximportdata
updated 6.4 years ago by 42k • written 6.4 years ago by • 0
2
votes
6
replies
1.8k
views
[DESeq2] Different results from tutorial
deseq2 tximportdata tximport
updated 6.5 years ago by 42k • written 6.5 years ago by • 0
0
votes
1
reply
2.6k
views
could not find function "tximport"
tximportdata
updated 6.7 years ago by 51k • written 6.7 years ago by ▴ 30
0
votes
9
replies
3.8k
views
Upgrade bioconductor 3.2 to 3.3
bioclIte tximportData
updated 6.8 years ago by ▴ 80 • written 8.4 years ago by ▴ 40
0
votes
3
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15k
views
Problem installing tximportData
tximportdata
7.7 years ago elg • 0
3
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5
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2.9k
views
txImport: a gene seems missing from the sample data
txImportData txImport
updated 3.8 years ago by 67k • written 7.7 years ago by • 0
0
votes
1
reply
1.9k
views
How to remove genes with 0 counts in tximport?
tximport deseq tximportdata deseq2
updated 7.8 years ago by 42k • written 7.8 years ago by ▴ 10
0
votes
7
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1.9k
views
PCA results different from th same sample but different counting method
deseq2 pca tximportdata htseqcounts
updated 8.4 years ago by 42k • written 8.4 years ago by ▴ 40
23 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
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