Showing : twochannel • reset
3
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8
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Design matrix for a two-color experimental design testing for time effect on 3 treated cell-lines, each with its own time=0 control
limma microarray design matrix twochannel
updated 6.4 years ago by 52k • written 6.4 years ago by ▴ 110
0
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1
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1.6k
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Downloading Twochannel microarray data from ArrayExpress
arrayexpress twochannel microarray
7.2 years ago Andy91 ▴ 60
5
votes
10
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1.8k
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Limma Design Matrix for two channel agilent arrays (direct experimental design)
Limma limma design matrix agilent twochannel
8.9 years ago pm2015 • 0
3
votes
9
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2.3k
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Single channel analysis of two-color agilent array using limma
agilent limma twochannel microarray
updated 9.2 years ago by 52k • written 9.2 years ago by • 0
1
vote
2
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2.3k
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summarization for G4110B two colors agilent array: how to?
marray agilent twochannel normalization limma
updated 9.9 years ago by 52k • written 10.0 years ago by ▴ 240
3
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1
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3.2k
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WGCNA: single channel microarray, one categorical covariate, how to apply it?
wgcna twochannel onechannel
updated 10.1 years ago by ★ 3.0k • written 10.1 years ago by ▴ 20
0
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4
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1.7k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.6 years ago by ▴ 160 • written 15.6 years ago by ★ 1.1k
0
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2
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3.7k
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failure in GDS2eSet() in package GEOquery
Microarray OneChannel TwoChannel DataImport bridge GEOquery Microarray OneChannel bridge
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 290
0
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1
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1.4k
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read.maimages problem under sun ?
Microarray OneChannel TwoChannel DifferentialExpression Preprocessing QualityControl affy
17.6 years ago Amin Moghaddasi ▴ 130
9 results • Page 1 of 1
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Replies
Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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