Showing : ttest • reset
5
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GSEA for RNA-seq analysis
GSEA Limma preranked GSEA tTest
updated 6.3 years ago by 51k • written 6.3 years ago by ▴ 10
0
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3
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1.6k
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apply Kruskall or other non-parametric test for multiple comparisons
r kruskal ttest nonparametric
7.0 years ago bhgyu ▴ 30
1
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3
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1.8k
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Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
7.2 years ago lirongrossmann ▴ 80
7
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11
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4.0k
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t-statistic cutoff for finding DMRs with bsseq
bsseq dmr ttest pvalue
updated 8.8 years ago by 67k • written 8.8 years ago by ▴ 660
4 results • Page 1 of 1
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Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di by James W. MacDonald 67k
The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k
Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k
You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…
Answer: HilBertVis install error by James W. MacDonald 67k
It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…
Votes
A: TopGO: How to retrieve the gene list related to a GO ID ?
A: Error in DESeqDataSet : some values in assay are not integers
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
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