updated 8.8 years ago by
Katja Hebestreit
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written 8.9 years ago by
kms68
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Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data
by
rcreed
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0
The updated version worked well on my data. Thank you!
Answer: DE analysis on Single cell RNA Seq time course data (using pseudotime) with 5 di
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James W. MacDonald
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The two contrasts at the bottom are identical but for the sign of the logFC, so you should expect the same results (except for flipped sign…
Comment: Identical samples after deseq2 batch effect removal
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Michael Love
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Oh, i didn't realize there is another method in the mix here.
I would not necessarily trust this "batch correction" method, and suspect o…
Comment: Identifying potentially associated gene set to drug response using GSVA
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Kent
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0
Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
by
James W. MacDonald
67k
You can easily answer this question yourself.
```
> library(BiocPkgTools)
Loading required package: htmlwidgets
> depdf <- buildPkgDe…
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