Showing : tilingarray • reset
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Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor affy tilingarray
7.6 years ago jmtepp • 0
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Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
9.0 years ago bruce.moran ▴ 30
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undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray tilingArray
11.9 years ago Du, Yang ▴ 10
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tilingArray getting started questions
GO Yeast tilingArray Starr GO Yeast tilingArray Starr
13.8 years ago Noah Dowell ▴ 410
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1.3k
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Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.6 years ago by ▴ 430 • written 14.7 years ago by ▴ 410
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tilingArray: error message in function segment()
tilingArray tilingArray
15.3 years ago Hui Tang ▴ 20
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tilingArray problems
Normalization GO tilingArray Normalization GO tilingArray
15.6 years ago Wolfgang Huber ★ 13k
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TilingArray Normalization
Transcription Normalization probe tilingArray Transcription Normalization probe tilingArray
updated 15.6 years ago by ★ 13k • written 15.6 years ago by ▴ 90
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tilingArray problems
tilingArray tilingArray
15.7 years ago Anjan Purkayastha ▴ 90
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1.1k
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applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 50
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tilingArray- normalizeByReference
probe tilingArray probe tilingArray
15.7 years ago Anjan Purkayastha ▴ 90
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combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
16.8 years ago Richard Harrison ▴ 70
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1.5k
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.8 years ago by ▴ 230 • written 16.8 years ago by ▴ 110
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.8 years ago by ▴ 40 • written 16.8 years ago by ▴ 110
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Stuck with Yeast Tiling Array
tilingArray tilingArray
updated 16.8 years ago by ▴ 730 • written 16.8 years ago by ▴ 70
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Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.3 years ago by ★ 13k • written 17.3 years ago by ★ 1.3k
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Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.4 years ago by ★ 13k • written 17.4 years ago by ★ 1.3k
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Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 17.8 years ago by ▴ 40 • written 17.8 years ago by ▴ 140
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FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 17.9 years ago by ★ 13k • written 17.9 years ago by ▴ 310
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tiling/SNP microarrays
SNP Coverage tilingArray SNP Coverage tilingArray
updated 18.0 years ago by 21k • written 18.0 years ago by ▴ 10
20 results • Page 1 of 1
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Comment: Trouble Installing DADA2 (warning: R new user) by shepherl 3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Answer: LRT test for different timepoints (one tissue types vs. many tissue types) by Michael Love 42k
No, this is a contrast of estimated coefficient (e.g. the Wald test).
Comment: Ranking the GSEA Results by Michael Love 42k
Got it. So then I'll take off DESeq2 as its mostly a downstream question. You may need to direct the fgsea developer to the thread. When yo…
Comment: Ranking the GSEA Results by V_Vibes • 0
I have actually used the "fgsea" Bioconductor package which is used for GSEA. Thanks for pointing that out. I have edited that in the origi…
Comment: Ranking the GSEA Results by V_Vibes • 0
The idea was inspired by people ranking the DEGs for preranked GSEA using their log2FC * (-log10 p-value). Also, the GSEA results I am gett…
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Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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