Showing : tilingarray • reset
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Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor affy tilingarray
8.1 years ago jmtepp • 0
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Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
9.4 years ago bruce.moran ▴ 30
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undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray tilingArray
12.4 years ago Du, Yang ▴ 10
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tilingArray getting started questions
GO Yeast tilingArray Starr GO Yeast tilingArray Starr
14.3 years ago Noah Dowell ▴ 410
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Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 15.1 years ago by ▴ 430 • written 15.1 years ago by ▴ 410
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tilingArray: error message in function segment()
tilingArray tilingArray
15.8 years ago Hui Tang ▴ 20
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tilingArray problems
Normalization GO tilingArray Normalization GO tilingArray
16.1 years ago Wolfgang Huber ★ 13k
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TilingArray Normalization
Transcription Normalization probe tilingArray Transcription Normalization probe tilingArray
updated 16.1 years ago by ★ 13k • written 16.1 years ago by ▴ 90
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tilingArray problems
tilingArray tilingArray
16.1 years ago Anjan Purkayastha ▴ 90
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applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
updated 16.1 years ago by ★ 13k • written 16.1 years ago by ▴ 50
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tilingArray- normalizeByReference
probe tilingArray probe tilingArray
16.2 years ago Anjan Purkayastha ▴ 90
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combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
17.2 years ago Richard Harrison ▴ 70
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 17.2 years ago by ▴ 230 • written 17.2 years ago by ▴ 110
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 17.2 years ago by ▴ 40 • written 17.2 years ago by ▴ 110
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Stuck with Yeast Tiling Array
tilingArray tilingArray
updated 17.3 years ago by ▴ 730 • written 17.3 years ago by ▴ 70
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Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ★ 1.3k
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Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.8 years ago by ★ 13k • written 17.8 years ago by ★ 1.3k
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Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
updated 18.3 years ago by ▴ 40 • written 18.3 years ago by ▴ 140
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FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
updated 18.3 years ago by ★ 13k • written 18.3 years ago by ▴ 310
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tiling/SNP microarrays
SNP Coverage tilingArray SNP Coverage tilingArray
updated 18.5 years ago by 21k • written 18.5 years ago by ▴ 10
20 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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