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tidyverse R SingleCellExperiment SingleCellData

updated 6 days ago by njmcdirectportal.com • 0 • written 16 months ago by Sitapriya • 0

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edgeR R tidyverse tidybulk

2.5 years ago • updated 2.4 years ago Amit Indap ▴ 10

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Rscript tidyr dataframe tidyverse offtopic

updated 2.7 years ago by Marcel Ramos 700 • written 2.7 years ago by Nikhil • 0

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bioconductor R tidyverse IlluminaHumanMethylationEPICanno.ilm10b4.hg19.

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by jonellevillar • 0

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variantannotation tidyverse genomicfeatures

updated 7.6 years ago by Hervé Pagès 16k • written 7.6 years ago by yduan004 ▴ 20

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Comment: Differing results with DESeq2 by JKim • 0

My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

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A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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