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tidyverse R SingleCellExperiment SingleCellData

updated 12 days ago by rottaamil • 0 • written 11 months ago by Sitapriya • 0

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edgeR R tidyverse tidybulk

2.0 years ago Amit Indap ▴ 10

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Rscript tidyr dataframe tidyverse offtopic

updated 2.3 years ago by Marcel Ramos 700 • written 2.3 years ago by Nikhil • 0

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bioconductor R tidyverse IlluminaHumanMethylationEPICanno.ilm10b4.hg19.

updated 6.3 years ago by James W. MacDonald 67k • written 6.3 years ago by jonellevillar • 0

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variantannotation tidyverse genomicfeatures

updated 7.2 years ago by Hervé Pagès 16k • written 7.2 years ago by yduan004 ▴ 20

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

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Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

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