Bioconductor Tidybulk

Showing : tidybulk • reset

3

votes

5

replies

1.2k

views

DESeq2 designmatrix edgeR limma tidybulk

updated 21 months ago by Michael Love 42k • written 21 months ago by aditya.m ▴ 10

0

votes

4

replies

1.3k

views

edgeR R tidyverse tidybulk

2.0 years ago Amit Indap ▴ 10

2 results • Page 1 of 1

Recent ...

Replies

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for all of your help! I really appreciate it!

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by Gordon Smyth 51k

Thanks for extra info, but be careful that the Bioconductor support site requires code to be an markdown format. Copying code with prompts …

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M by dseauer • 0

Thank you so much for your reply! I am sincerely sorry- of course I do not have multiple GAL files- just one- I meant gpr files! I am so so…

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

Thansk Herve', I will try. For reference this is the parallelization implementation of zellkonverter, to save anndata from SCE https://gi…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Jason • 0

Any update on the resolution to this? I'm having the same issue with another species.

Votes

Answer: Handling biological replicates in DESeq2

A: Does edgeR need to specify reference group?

Awards • All

Commentator to James W. MacDonald 67k

Popular Question to Stefano Mangiola ▴ 20