Bioconductor Technical replicates

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1.4k

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DRIMSeq R DTU technical replicates deseq2

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by poecile.pal • 0

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6.7k

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limma duplicateCorrelation rna-seq technical replicates biological replicates

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.4 years ago by paul.alto ▴ 50

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1.9k

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limma technical replicates biological replicates paired analysis

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by paul.alto ▴ 50

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2.9k

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ballgown biologicalreplicates technical replicates stringtie

updated 7.2 years ago by Alyssa Frazee ▴ 210 • written 7.9 years ago by linda.boshans • 0

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6.6k

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rnaseq edger technical replicates

updated 7.7 years ago by Ryan C. Thompson ★ 7.9k • written 7.7 years ago by alakatos ▴ 130

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5.0k

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limma microarray duplicatecorrelation technical replicates linear model

updated 9.1 years ago by Aaron Lun ★ 28k • written 9.1 years ago by Eleni Christodoulou ▴ 150

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2.8k

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illumina human ht-12 v4 technical replicates

updated 9.1 years ago by Gordon Smyth 52k • written 9.1 years ago by Eleni Christodoulou ▴ 150

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4.0k

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limma technical replicates

9.2 years ago Eleni Christodoulou ▴ 150

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1.5k

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rnaseq ruvnormalize normalization technical replicates

9.2 years ago thomas.wolfe • 0

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3.5k

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limma covariate block paired samples technical replicates

updated 9.3 years ago by Aaron Lun ★ 28k • written 9.3 years ago by eleonoregravier ▴ 70

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2.0k

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technical replicates

9.7 years ago sara.pegolo • 0

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Answer: Welcome Bonus of USD 999 for free, join today! by xihaxiw582 • 0

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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Popular Question to xiaofeiwang198266 • 0

Popular Question to maltethodberg ▴ 180