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2.7k

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samtools tabix VariantAnnotation VCFArray

updated 3.6 years ago by Vincent J. Carey, Jr. 6.7k • written 3.7 years ago by naive • 0

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VariantAnnotation readvcf tabix

updated 3.6 years ago by Vincent J. Carey, Jr. 6.7k • written 3.7 years ago by naive • 0

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783

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tabix

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by Tim Triche ★ 4.2k

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3.1k

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variantannotation tabix

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by TimothéeFlutre ▴ 80

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1.6k

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readvcf vcf tabix

updated 9.3 years ago by Valerie Obenchain ★ 6.8k • written 9.3 years ago by Simon Coetzee ▴ 50

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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

Answer: Identical samples after deseq2 batch effect removal by Michael Love 42k

> 2 of my treatment samples have identical normalised gene expression for all genes. This sounds like a quantification / sample labeling…

Answer: Downloading Metagenomic Data with Higher Taxonomic Units by Levi Waldron ★ 1.1k

I'm sorry I missed the first post! Yes, it is easy to agglomerate ranks in curatedMetagenomicData datasets. See the example in the vignette…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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