Bioconductor Syntenet

Showing : syntenet • reset

votes

442

views

syntenet

updated 9 months ago by Fabricio Almeida-Silva ▴ 40 • written 11 months ago by Sujeevan • 0

votes

485

views

syntenet

updated 9 months ago by Fabricio Almeida-Silva ▴ 40 • written 12 months ago by Sujeevan • 0

votes

replies

502

views

syntenet doubletrouble

9 months ago hfyuan2016 • 0

votes

replies

827

views

syntenet microsynteny blocks synteny

written 17 months ago by Alexandros • 0

votes

822

views

syntenet Bacteria synteny

updated 12 months ago by Fabricio Almeida-Silva ▴ 40 • written 14 months ago by kluongni • 0

vote

replies

2.5k

views

syntenet synteny Network

written 2.1 years ago by Alexandros • 0

votes

replies

823

views

Network syntenet Clustering coefficient

18 months ago Alexandros • 0

votes

replies

1.8k

views

syntenet

updated 11 months ago by Sujeevan • 0 • written 2.0 years ago by lwanderson8c • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

Thank you. What is the difference between setting robust=TRUE in glmQLFit and estimateGLMRobustDisp? The paper i mentioned in the post used…

Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

Votes

Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis

scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

Awards • All

Popular Question to gingergeiger22 • 0