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Running DropletUtils::swappedDrops() on multiplexed samples from different libraries
swappeddrops
dropletutils
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
rosano
• 0
1
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1.2k
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Is there a limitation to the number of cells swappedDrops can handle?
swappedDrops
DropletUtils
5.5 years ago
joseph.joonsang
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2
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5
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1.4k
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Recommendations for running DropletUtils::swappedDrops() on multiplexed samples from multiple libraries
dropletutils
swappeddrops
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
rosano
• 0
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Comment: Combining RNAseq and microarray data using edgeR/limma-voom
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Adam Marstrand
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Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
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Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Comment: How many of my genes from my gene list are in each KEGG pathway?
by
josephasmith1310
• 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open!
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Esperan
• 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
Gordon Smyth
51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom
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