Bioconductor Svd

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svd methylation champ

updated 24 months ago by shepherl 4.1k • written 24 months ago by Giulia • 0

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568

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distance svd

2.2 years ago Lenny186 • 0

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ChAMP SVD Array Slide Sample Plate

updated 6.5 years ago by Yuan Tian ▴ 290 • written 6.5 years ago by yuabrahamliu • 0

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sva svd explained variance pca

updated 8.5 years ago by Jeff Leek ▴ 650 • written 8.5 years ago by Mattia ▴ 10

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champ methylation 450k SVD EPIC News

8.6 years ago Yuan Tian ▴ 90

5 results • Page 1 of 1

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Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

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annotation EpicV2

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

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Popular Question to Ariel Chernomoretz ▴ 170