5.5 years ago
Martin Morgan
25k
1
vote
0
replies
596
views
0
votes
2
replies
1.1k
views
Recent ...
Replies
Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
by
aitor
•
0
Hi everyone.
I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…
Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val
by
James W. MacDonald
68k
You will need to provide a self-contained example, or it is unlikely that anybody could debug any possible issue.
Answer: Limma - Complex 2-way multi-level contrast with paired samples
by
James W. MacDonald
68k
If you are fitting donor as a fixed effect you do not also need to fit as a random effect. The limma package fits a generalized least squar…
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★
4.7k
Yes, perfectly valid. Analyzing counts from high-throughput experiments with DESeq2 (or edgeR, or limma) is standard. After all, what DiffB…
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
by
AB
▴
110
Force=TRUE did the trick. Thank you.
Votes
Awards
• All
Popular Question to
Gordon Smyth
52k
Popular Question to
AB
▴
110
Popular Question to
Lluís Revilla Sancho
▴
760
Locations
• All
United States, 3 minutes ago
United Kingdom, 14 minutes ago
France, 15 minutes ago
United Kingdom, 41 minutes ago
Spain, 43 minutes ago
United States, 3 minutes ago
United Kingdom, 14 minutes ago
France, 15 minutes ago
United Kingdom, 41 minutes ago
Spain, 43 minutes ago
Traffic: 1085 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6