Bioconductor Subsetbyoverlaps

Showing : subsetbyoverlaps • reset

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InteractionSet subsetByOverlaps GenomicInteractions

17 months ago LaureTomas ▴ 10

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4.1k

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findOverlaps GPos GenomicRanges subsetByOverlaps

updated 2.9 years ago by James W. MacDonald 67k • written 3.0 years ago by Robert ▴ 10

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granges genomicranges iranges subsetByOverlaps

updated 2.8 years ago by b.simpson • 0 • written 9.2 years ago by vinod.acear ▴ 50

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2.3k

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genomicranges subsetbyoverlaps granges findoverlaps

7.3 years ago Assa Yeroslaviz ★ 1.5k

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1.9k

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granges findoverlaps subsetbyoverlaps

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by vinod.acear ▴ 50

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1.8k

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granges genomicranges findoverlaps subsetbyoverlaps

updated 9.1 years ago by Hervé Pagès 16k • written 9.1 years ago by vinod.acear ▴ 50

6 results • Page 1 of 1

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Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Hi Tim, Thanks for your reply! Yes, my data is 450K, and it is TCGA methylation data downloaded by TCGAbiolinks. The problem is that I can …

Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

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A: Advice on correcting for batch effect using DESeq2

Comment: Feature Counts - potential bug with outfile.jcounts

Answer: Feature Counts - potential bug with outfile.jcounts

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k