Bioconductor Strand

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1.2k

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Gviz strand

4.5 years ago svenbioinf • 0

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3.3k

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rnaseq strand deseq2

7.5 years ago • updated 7.4 years ago lirongrossmann ▴ 80

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1.1k

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strand rnaseq differential gene expression batch effect counts

7.6 years ago lirongrossmann ▴ 80

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1.8k

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easyrnaseq rnaseq strand

updated 7.8 years ago by Hervé Pagès 16k • written 7.8 years ago by Michael Dondrup ▴ 10

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1.4k

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Granges IRanges gff import.gff3 strand

updated 10.5 years ago by Hervé Pagès 16k • written 10.5 years ago by topher.hamm • 0

5 results • Page 1 of 1

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Answer: Having Trouble Using CNE12() and CNE21() in CNEr by 1324087964 • 0

![enter image description here][1] [1]: /media/images/d1a91557-b19e-4fbf-b5a1-c4fd42b9

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

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Comment: DESeq - help with pair wise comparisons

Answer: SingleR with multiple single cell references

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