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stats r RNASeqData limma voom

11 months ago pl23 • 0

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2.4k

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Biobase stats

updated 3.6 years ago by Kevin Blighe ★ 4.0k • written 3.6 years ago by Gero • 0

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post-doc job stats computational biology Job

8.2 years ago Benilton Carvalho ★ 4.3k

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R python stats bioinformatics perl Job

8.3 years ago clif.duhn • 0

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updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by Angel ▴ 40

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deseq2 linear model ribosome profiling stats

updated 9.2 years ago by Ryan C. Thompson ★ 7.9k • written 9.3 years ago by Jake ▴ 90

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updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by mrk.carty ▴ 30

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bioconductor stats

9.8 years ago Lluís Revilla Sancho ▴ 760

8 results • Page 1 of 1

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Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0

Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…

Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k

I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …

Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0

Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.

Votes

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim

A: How does edgeR cpm function calculate log(CPM) values?

Awards • All

Supporter to Paul Harrison ▴ 100

Popular Question to Mikhail Dozmorov ▴ 30