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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
16 months ago
pl23
• 0
3
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4
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2.6k
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R session aborted: prcomp
Biobase
stats
updated 4.0 years ago by
Kevin Blighe
★ 4.0k • written 4.0 years ago by
Gero
• 0
0
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0
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1.5k
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Job:
Two Post-doctoral Positions at University of Campinas
post-doc
job
stats
computational biology
Job
8.6 years ago
Benilton Carvalho
★ 4.3k
0
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0
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1.6k
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
8.7 years ago
clif.duhn
• 0
5
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6
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1.7k
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getting a matrix with diagonal =1
stats
updated 9.2 years ago by
Aaron Lun
★ 28k • written 9.2 years ago by
Angel
▴ 40
3
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3
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2.5k
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ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 9.7 years ago by
Ryan C. Thompson
★ 7.9k • written 9.7 years ago by
Jake
▴ 90
2
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2
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2.5k
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Memory management in R
stats
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
mrk.carty
▴ 30
2
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5
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1.8k
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Download the stats of Bioconductor
bioconductor
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10.2 years ago
Lluís Revilla Sancho
▴ 760
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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