Bioconductor Stats

Showing : stats • reset

votes

replies

1.1k

views

stats r RNASeqData limma voom

15 months ago pl23 • 0

votes

replies

2.5k

views

Biobase stats

updated 3.9 years ago by Kevin Blighe ★ 4.0k • written 3.9 years ago by Gero • 0

votes

replies

1.5k

views

post-doc job stats computational biology Job

8.5 years ago Benilton Carvalho ★ 4.3k

votes

replies

1.6k

views

R python stats bioinformatics perl Job

8.6 years ago clif.duhn • 0

votes

replies

1.7k

views

stats

updated 9.2 years ago by Aaron Lun ★ 28k • written 9.2 years ago by Angel ▴ 40

votes

replies

2.5k

views

deseq2 linear model ribosome profiling stats

updated 9.6 years ago by Ryan C. Thompson ★ 7.9k • written 9.6 years ago by Jake ▴ 90

votes

replies

2.4k

views

stats

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by mrk.carty ▴ 30

votes

replies

1.8k

views

bioconductor stats

10.1 years ago Lluís Revilla Sancho ▴ 760

8 results • Page 1 of 1

Recent ...

Replies

Comment: DepMap data mismatch by Laurent Gatto 1.6k

It might be due to different versions. The repacked/cleaned data in the `depmap` R/Bioconductor package is old, but the latest files can al…

Comment: Conumee2 - CNV.summaryplot() by James W. MacDonald 68k

If you are using `conumee2`, then you are in the wrong place. That isn't a Bioconductor package (yet? No idea if they have/will submit it).

Answer: myvariant error by James W. MacDonald 68k

You don't show anything about the data you are annotating, so it's hard to say what the problem might be. Does the example data work for yo…

Answer: Conumee2 - CNV.summaryplot() by James W. MacDonald 68k

There doesn't appear to be a function called `CNV.summaryplot` in `conumee`. What package does that function come from?

Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …

Votes

A: What is the "linear model" part used for in Limma?

Comment: Use of limma R package with targeted proteomics for DE analysis

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Awards • All