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3
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Is it appropriate to apply linear mixed models to Voom transformed data?
stats r RNASeqData limma voom
13 months ago pl23 • 0
3
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4
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2.4k
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R session aborted: prcomp
Biobase stats
updated 3.7 years ago by ★ 4.0k • written 3.7 years ago by • 0
0
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Job: Two Post-doctoral Positions at University of Campinas
post-doc job stats computational biology Job
8.3 years ago Benilton Carvalho ★ 4.3k
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1.5k
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Job: Data Scientist / Bioinformatician / Statistician at University of California
R python stats bioinformatics perl Job
8.4 years ago clif.duhn • 0
5
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6
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1.6k
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getting a matrix with diagonal =1
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updated 9.0 years ago by ★ 28k • written 9.0 years ago by ▴ 40
3
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3
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2.4k
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ribosome profiling analysis with different dispersions
deseq2 linear model ribosome profiling stats
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by ▴ 90
2
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2
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2.4k
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Memory management in R
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updated 9.7 years ago by 25k • written 9.7 years ago by ▴ 30
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5
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1.7k
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Download the stats of Bioconductor
bioconductor stats
9.9 years ago Lluís Revilla Sancho ▴ 760
8 results • Page 1 of 1
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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