Bioconductor Statistical power

Showing : statistical power • reset

4

votes

5

replies

2.5k

views

limma sample size microarrays statistical power

6.6 years ago eleonoregravier ▴ 70

2

votes

4

replies

1.3k

views

limma statistical power design variability microarray

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by roser.navarro • 0

3

votes

3

replies

1.8k

views

csaw differential binding analysis sample size independent filtering statistical power

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by zhangly811 • 0

2

votes

3

replies

17k

views

deseq2 statistical power independent filtering

10.0 years ago alejandro.colaneri ▴ 20

4 results • Page 1 of 1

Recent ...

Replies

Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: ESTMATE, MCPcounter, EPIC, xCell input by Kang • 0

These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…

Comment: Robust way of dealing with low number of samples for Differential Gene Expressio by Kang • 0

I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k