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starr
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
8.0 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.4k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
9.7 years ago • updated 9.6 years ago
ashubiochem
• 0
0
votes
1
reply
1.7k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
9.8 years ago
bruce.moran
▴ 30
0
votes
1
reply
1.2k
views
Starr package: cmarrt.ma error
Starr
Starr
updated 11.0 years ago by
Julie Zhu
★ 4.3k • written 11.0 years ago by
Paul
▴ 10
0
votes
0
replies
1.1k
views
Starr package: cmarrt.ma error
Starr
Starr
11.0 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.3k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 13.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 13.4 years ago by
Guest User
★ 13k
0
votes
1
reply
981
views
help with Starr
GO
Starr
GO
Starr
updated 13.9 years ago by
Martin Morgan
25k • written 13.9 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.6k
views
Reading GFF using Starr
Starr
Starr
updated 14.1 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.1 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.8k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
14.6 years ago
Noah Dowell
▴ 410
0
votes
3
replies
1.8k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 14.7 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.7 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
1.9k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 14.8 years ago by
Julie Zhu
★ 4.3k • written 14.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.1k
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 14.9 years ago by
Raphael Gottardo
▴ 40 • written 14.9 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.1k
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 15.3 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 15.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.1k
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 15.3 years ago by
Wolfgang Huber
★ 13k • written 15.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
968
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 15.3 years ago by
Martin Morgan
25k • written 15.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.4k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 15.4 years ago by
Tobias Straub
▴ 430 • written 15.4 years ago by
Noah Dowell
▴ 410
16 results • Page
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Answer: WGCNA
by
ATpoint
★ 4.8k
> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA. This …
Answer: cannot download atena annotation for human
by
Robert Castelo
★ 3.4k
Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…
Answer: Comparison of results obtained from a subset of the data versus the complete dat
by
swbarnes2
★ 1.4k
In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.
Comment: Differential expression analysis using two TCGA datasets
by
ATpoint
★ 4.8k
If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Answer: PhD scholar
by
ATpoint
★ 4.8k
Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
Votes
Answer: Origin of the labels for the SingleCellMultiModal dataset
Answer: PhD scholar
Answer: how to use `arrayWeightsQuick()`?
Answer: how to use `arrayWeightsQuick()`?
Having Trouble Using CNE12() and CNE21() in CNEr
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