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votes

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1.1k

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DESeq2 stageR

4 months ago • updated 3 months ago alephreish • 0

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replies

575

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DEXSeq stageR

12 months ago jbono ▴ 10

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710

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stageR

updated 3.1 years ago by Koen Van den Berge ▴ 180 • written 3.1 years ago by giwa.ao • 0

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976

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DRIMSeq stageR

updated 5.7 years ago by Koen Van den Berge ▴ 180 • written 5.7 years ago by sdvie • 0

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1.9k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.8 years ago d-joester ▴ 20

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1.5k

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limma stageR decideTests

updated 5.8 years ago by Koen Van den Berge ▴ 180 • written 5.8 years ago by maltethodberg ▴ 180

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1.2k

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drimseq rnaseqdtu stager

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by Jack.Hearn • 0

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1.8k

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DEXSeq StageR rnaseqDTU

updated 6.0 years ago by Michael Love 42k • written 6.1 years ago by rbenel ▴ 40

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2.0k

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drimseq stageR dtu salmon rna seq

updated 6.3 years ago by Koen Van den Berge ▴ 180 • written 6.3 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Comment: Problem at champ.load by icecreamlover • 0

Hello! Were you able to figure this out? I am running into the same error!

Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0

Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Votes

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

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Popular Question to Guido Hooiveld ★ 4.1k