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1.2k

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DESeq2 stageR

4 months ago alephreish • 0

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589

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DEXSeq stageR

12 months ago jbono ▴ 10

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722

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stageR

updated 3.1 years ago by Koen Van den Berge ▴ 180 • written 3.1 years ago by giwa.ao • 0

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993

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DRIMSeq stageR

updated 5.7 years ago by Koen Van den Berge ▴ 180 • written 5.7 years ago by sdvie • 0

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1.9k

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stageR rnaseqDTU DRIMSeq DEXSeq

5.8 years ago d-joester ▴ 20

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1.5k

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limma stageR decideTests

updated 5.9 years ago by Koen Van den Berge ▴ 180 • written 5.9 years ago by maltethodberg ▴ 180

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1.3k

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drimseq rnaseqdtu stager

updated 6.0 years ago by Michael Love 43k • written 6.0 years ago by Jack.Hearn • 0

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1.8k

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DEXSeq StageR rnaseqDTU

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by rbenel ▴ 40

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2.1k

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drimseq stageR dtu salmon rna seq

updated 6.4 years ago by Koen Van den Berge ▴ 180 • written 6.4 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Comment: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

Probably nf-core did not run with bootstrap/gibbs replicates. Check the code. See salmon docs on how to turn that on.

Comment: What type of counts data to import for performing Isoform analysis in edgeR by mohammedtoufiq91 ▴ 10

@atpoint Thank you. I did wanted to try using the `quant.sf` files from the `salmon` run by referring edgeR user guide example `4.6 Differe…

Comment: athPkgBuilder data source :missing probesets by bobihanigujjar • 0

In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …

Comment: Crossover design with limma by SamGG ▴ 360

IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…

Answer: What type of counts data to import for performing Isoform analysis in edgeR by ATpoint ★ 4.5k

You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…

Votes

Comment: ANOVA like approach of edgeR

Comment: Crossover design with limma

Answer: DESeq2 normalization vs VST vs rlog

Comment: makeContrastsDream for Interaction

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

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