Bioconductor StageR

Showing : stageR • reset

votes

replies

1.5k

views

DESeq2 stageR

9 months ago • updated 8 months ago alephreish • 0

votes

replies

687

views

DEXSeq stageR

17 months ago jbono ▴ 10

votes

793

views

stageR

updated 3.5 years ago by Koen Van den Berge ▴ 180 • written 3.5 years ago by giwa.ao • 0

votes

1.1k

views

DRIMSeq stageR

updated 6.1 years ago by Koen Van den Berge ▴ 180 • written 6.1 years ago by sdvie • 0

votes

replies

2.0k

views

stageR rnaseqDTU DRIMSeq DEXSeq

6.2 years ago d-joester ▴ 20

votes

replies

1.6k

views

limma stageR decideTests

updated 6.2 years ago by Koen Van den Berge ▴ 180 • written 6.2 years ago by maltethodberg ▴ 180

votes

replies

1.4k

views

drimseq rnaseqdtu stager

updated 6.3 years ago by Michael Love 43k • written 6.3 years ago by Jack.Hearn • 0

vote

replies

2.0k

views

DEXSeq StageR rnaseqDTU

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by rbenel ▴ 40

votes

replies

2.2k

views

drimseq stageR dtu salmon rna seq

updated 6.7 years ago by Koen Van den Berge ▴ 180 • written 6.7 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All