Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
stageR
•
reset
0
votes
10
replies
1.1k
views
Two treatments, one control
DESeq2
stageR
4 months ago • updated 3 months ago
alephreish
• 0
0
votes
2
replies
575
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
12 months ago
jbono
▴ 10
0
votes
1
reply
710
views
stageR p-adj values of zero
stageR
updated 3.1 years ago by
Koen Van den Berge
▴ 180 • written 3.1 years ago by
giwa.ao
• 0
0
votes
1
reply
976
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 5.7 years ago by
Koen Van den Berge
▴ 180 • written 5.7 years ago by
sdvie
• 0
2
votes
4
replies
1.9k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.8 years ago
d-joester
▴ 20
4
votes
4
replies
1.5k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 5.8 years ago by
Koen Van den Berge
▴ 180 • written 5.8 years ago by
maltethodberg
▴ 180
0
votes
3
replies
1.2k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 5.9 years ago by
Michael Love
42k • written 5.9 years ago by
Jack.Hearn
• 0
1
vote
5
replies
1.8k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 6.0 years ago by
Michael Love
42k • written 6.1 years ago by
rbenel
▴ 40
2
votes
9
replies
2.0k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 6.3 years ago by
Koen Van den Berge
▴ 180 • written 6.3 years ago by
fiona.dick91
▴ 60
9 results • Page
1 of 1
Recent ...
Replies
Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Awards
• All
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
Gordon Smyth
51k
Popular Question
to
shepherl
4.1k
Supporter
to
Paul Harrison
▴ 100
Popular Question
to
Mikhail Dozmorov
▴ 30
Locations
• All
Denmark,
just now
San Diego,
1 minute ago
France,
22 minutes ago
United States,
28 minutes ago
EMBL Heidelberg,
29 minutes ago
Traffic: 645 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6