Bioconductor StageR

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1.6k

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DESeq2 stageR

9 months ago alephreish • 0

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708

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DEXSeq stageR

17 months ago jbono ▴ 10

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816

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stageR

updated 3.5 years ago by Koen Van den Berge ▴ 180 • written 3.6 years ago by giwa.ao • 0

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1.1k

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DRIMSeq stageR

updated 6.1 years ago by Koen Van den Berge ▴ 180 • written 6.1 years ago by sdvie • 0

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2.0k

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stageR rnaseqDTU DRIMSeq DEXSeq

6.2 years ago d-joester ▴ 20

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1.7k

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limma stageR decideTests

updated 6.3 years ago by Koen Van den Berge ▴ 180 • written 6.3 years ago by maltethodberg ▴ 180

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1.4k

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drimseq rnaseqdtu stager

updated 6.4 years ago by Michael Love 43k • written 6.4 years ago by Jack.Hearn • 0

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2.0k

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DEXSeq StageR rnaseqDTU

updated 6.5 years ago by Michael Love 43k • written 6.5 years ago by rbenel ▴ 40

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2.3k

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drimseq stageR dtu salmon rna seq

updated 6.8 years ago by Koen Van den Berge ▴ 180 • written 6.8 years ago by fiona.dick91 ▴ 60

9 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0

[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…

Comment: Filtering after DESeq by caroline.zanchi • 0

I am going to try this right now, thanks !

Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

Votes

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

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