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stageR
•
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0
votes
10
replies
1.2k
views
Two treatments, one control
DESeq2
stageR
4 months ago
alephreish
• 0
0
votes
2
replies
589
views
Swimming downstream: transcript fold changes
DEXSeq
stageR
12 months ago
jbono
▴ 10
0
votes
1
reply
721
views
stageR p-adj values of zero
stageR
updated 3.1 years ago by
Koen Van den Berge
▴ 180 • written 3.1 years ago by
giwa.ao
• 0
0
votes
1
reply
992
views
stageR with input from DRIMSeq
DRIMSeq
stageR
updated 5.7 years ago by
Koen Van den Berge
▴ 180 • written 5.7 years ago by
sdvie
• 0
2
votes
4
replies
1.9k
views
stageR: Error in stageWiseAdjustment
stageR
rnaseqDTU
DRIMSeq
DEXSeq
5.8 years ago
d-joester
▴ 20
4
votes
4
replies
1.5k
views
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
limma
stageR
decideTests
updated 5.9 years ago by
Koen Van den Berge
▴ 180 • written 5.9 years ago by
maltethodberg
▴ 180
0
votes
3
replies
1.3k
views
Post-hoc filtering on the standard deviation in proportions
drimseq
rnaseqdtu
stager
updated 6.0 years ago by
Michael Love
43k • written 6.0 years ago by
Jack.Hearn
• 0
1
vote
5
replies
1.8k
views
Plotting Expression of Differential Transcripts plotDEXseq
DEXSeq
StageR
rnaseqDTU
updated 6.1 years ago by
Michael Love
43k • written 6.1 years ago by
rbenel
▴ 40
2
votes
9
replies
2.1k
views
stageR NA in getAdjustedPValues() (method=dtu)
drimseq
stageR
dtu
salmon rna seq
updated 6.4 years ago by
Koen Van den Berge
▴ 180 • written 6.4 years ago by
fiona.dick91
▴ 60
9 results • Page
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In this article, we'll explore the demand for unbranded BJJ Gis and the benefits of choosing unbranded Gis for customization. [does anyone …
Comment: Crossover design with limma
by
SamGG
▴ 360
IMHO, here are the missing annotations treatmentdrug_orderDrugPlac - treatmentplacebo_orderDrugPlac, # effect of drug for the Drug…
Answer: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★ 4.5k
You don't need any of these files. You need the `catchSalmon` function which reads `quant.sf` and the inferential (Bootstrap/Gibbs) replica…
Comment: makeContrastsDream for Interaction
by
abadgerw
• 0
Thank you! I will try this out.
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by
abadgerw
• 0
Thanks, @gabrielhoffman The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…
Votes
Comment: ANOVA like approach of edgeR
Comment: Crossover design with limma
Answer: DESeq2 normalization vs VST vs rlog
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Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
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