Bioconductor Sra

Showing : sra • reset

votes

1.4k

views

SRA DESeq2

3.8 years ago Serge • 0

votes

replies

1.1k

views

RNA-seq SRA reverse reads forward reads

6.8 years ago modarzi ▴ 10

votes

1.6k

views

R fastq SRA sradb

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by grecoandreauni • 0

votes

replies

4.1k

views

sra chipseqDB fastq-dump .lite.sra

updated 8.5 years ago by James W. MacDonald 68k • written 8.5 years ago by xhe764 • 0

votes

replies

1.7k

views

ncbi sra search

9.2 years ago massacomgrao • 0

votes

4.3k

views

rnaseq biocparallel workflows sra Tutorial

9.8 years ago Sean Davis 21k

6 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Votes

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

Awards • All