Bioconductor SpatialLIBD

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spatialLIBD

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biorxiv spatialLIBD News

written 4.8 years ago by Leonardo Collado Torres ★ 1.1k

6 results • Page 1 of 1

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Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Sorry, I didn't see the added response to your original answer. I think that would be a great idea; a novel junction to annot…

Comment: Cannot install GO.db and org.Hs.eg.db by Gabriel • 0

The downloaded source packages are in 'C:Users\gabri\AppData\Local\Temp\RtmpailNer\downloaded_packages' Installation paths not writeable, …

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi Gordon, Thank you for pointing out that FeatureCounts detects junction reads de novo. It is not in the manual, and maybe could be. Give…

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2 by Michael Love 43k

I've seen in some papers ~1 TPM for saying something in mouse/human etc. was "minimally expressed". For an average length gene, 10 count…

Answer: Feature Counts - potential bug with outfile.jcounts by Gordon Smyth 52k

The behavior that you have documented is expected and is explained in the featureCounts documentation. The first thing to understand is th…

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Answer: Mapping Between GenBank ID's and Uniprot

Comment: What type of counts data to import for performing Isoform analysis in edgeR

A: Relations used in GO.db GOBPANCESTOR

Relations used in GO.db GOBPANCESTOR

Answer: RSubread output significantly different from bash Subread output

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