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oligo source Install

8 months ago Guido Hooiveld ★ 4.1k

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Source flowCore Repository git

updated 22 months ago by shepherl 4.1k • written 22 months ago by dominic.r • 0

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biocinstaller installation install source conda

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by jol.espinoz ▴ 40

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biocinstaller source

9.3 years ago michel.renou • 0

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security http source installation

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edgeR rpkm source code

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by thibault.lorin ▴ 10

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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