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oligo source Install

8 months ago • updated 7 months ago Guido Hooiveld ★ 4.1k

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Source flowCore Repository git

updated 21 months ago by shepherl 4.1k • written 21 months ago by dominic.r • 0

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biocinstaller installation install source conda

updated 8.4 years ago by Martin Morgan 25k • written 8.4 years ago by jol.espinoz ▴ 40

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biocinstaller source

9.2 years ago michel.renou • 0

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security http source installation

updated 9.6 years ago by Dan Tenenbaum ★ 8.2k • written 9.6 years ago by will.townes • 0

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edgeR rpkm source code

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by thibault.lorin ▴ 10

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Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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