Showing : software error • reset
3
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3
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3.9k
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maftools: Error in validateMaf(maf = maf, isTCGA = isTCGA, rdup = removeDuplicatedVariants, : missing required fields from MAF: Chromosome
software error maftools tcgabiolinks
updated 13 months ago by ▴ 200 • written 7.5 years ago by ▴ 100
0
votes
2
replies
2.1k
views
Error in validObject(.Object) : invalid class "CompressedGRangesList" object
software error
updated 3.0 years ago by • 0 • written 5.5 years ago by • 0
8
votes
8
replies
3.3k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 3.5 years ago by ▴ 300 • written 4.8 years ago by ▴ 40
2
votes
8
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3.0k
views
error in getBM (biomaRt): "error: no such table: metadata"
biomaRt software error
updated 3.7 years ago by ★ 6.6k • written 4.9 years ago by • 0
0
votes
4
replies
7.3k
views
cannot open fasta file, Error in .Call2("new_input_filexp", filepath, PACKAGE = "XVector")
software error
updated 4.0 years ago by • 0 • written 5.0 years ago by • 0
0
votes
2
replies
1.2k
views
DepMap copy number
software error depmap
updated 4.0 years ago by • 0 • written 4.5 years ago by • 0
4
votes
3
replies
24k
views
Unable to install nloptr
software error
updated 4.1 years ago by ▴ 20 • written 4.6 years ago by • 0
1
vote
2
replies
1.3k
views
How to load the new dataset and gene-sets into singscore package in R
software error
updated 4.3 years ago by • 0 • written 5.5 years ago by • 0
3
votes
4
replies
4.4k
views
ComplexHeatmap installation Error
software error
updated 4.4 years ago by 68k • written 8.1 years ago by ▴ 10
0
votes
3
replies
1.8k
views
Error in Forge the target package (BSgenome)
software error BSgenome
4.6 years ago • updated 4.5 years ago jiazhou0116 • 0
0
votes
4
replies
2.8k
views
Cannot properly finish biomaRt query
software error annotation biomart
updated 4.5 years ago by • 0 • written 4.9 years ago by ▴ 30
0
votes
2
replies
2.8k
views
Error during installation of GEOquery package (R 4.0.3, Bioconduct 3.11)
software error GEOquery
updated 4.5 years ago by 1.6k • written 4.5 years ago by • 0
0
votes
0
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975
views
flowCore: gives a "emptyValue" error when / is used as an escape character in .fcs file metadata
software error
4.5 years ago andrea.mcewan • 0
0
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1
reply
1.9k
views
Error: Unable to establish connection with R session
software error
updated 4.5 years ago by 1.6k • written 4.5 years ago by • 0
4
votes
5
replies
3.0k
views
how to get exons of multiple genes
software error
4.6 years ago • updated 4.5 years ago pegah.taklifi ▴ 30
0
votes
4
replies
2.1k
views
Error in GSVA: Error in dimnames(x) <- dn
software error
4.5 years ago ElaM • 0
0
votes
4
replies
1.6k
views
Viper error while creating Regulon object from minet adjacency matrix file ?
software error
updated 2.6 years ago by • 0 • written 4.6 years ago by • 0
0
votes
1
reply
1.1k
views
Vignette Run Time
software error
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 10
3
votes
2
replies
2.4k
views
Failed to install 'MetaboAnalystR' from GitHub
software error MetaboAnalystR mzR
updated 4.6 years ago by 1.6k • written 4.6 years ago by • 0
0
votes
0
replies
939
views
vcountPDict Out-of-Memory Errors
software error Biostrings
4.6 years ago JennyS • 0
1
vote
1
reply
1.3k
views
About generating a seed file (DCF format) for forging a BSgenome
software error BSgenome
updated 4.6 years ago by 16k • written 4.6 years ago by • 0
0
votes
4
replies
4.7k
views
DESeq2 installation in R
software error
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
1
vote
1
reply
1.6k
views
Error with view.molecule.2d function in rcdk
software error rcdk view.molecule.2d ViewMolecule2DTable
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
2
replies
1.8k
views
Error in installing org.Hs.eg.db
software error org.Hs.eg.db win10
updated 4.6 years ago by 25k • written 4.6 years ago by • 0
3
votes
12
replies
3.5k
views
DESeq2 Installation Errors
deseq2 software error
updated 2.7 years ago by • 0 • written 4.6 years ago by • 0
0
votes
2
replies
1.7k
views
Error in installing ChemmineOB
software error ChemmineOB rand.h macOS
updated 4.6 years ago by ▴ 10 • written 4.6 years ago by • 0
1
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2
replies
1.2k
views
error in forgeBSgenomeDataPkg
software error
updated 4.6 years ago by 68k • written 4.6 years ago by • 0
2
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3
replies
1.5k
views
Error in topGO analysis
software error topGO go
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
3
replies
1.5k
views
Use xcms but mzR occurs error
software error xcms
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
2
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2
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2.2k
views
BiocParallel : unable to find an inherited method for function 'bplapply' for signature '"integer", "call"'
software error
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 140
0
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4
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1.9k
views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error xcms MSnbase
updated 4.7 years ago by 1.6k • written 4.7 years ago by • 0
7
votes
2
replies
5.8k
views
Help in installing certain pacakges
software error install
updated 4.7 years ago by 25k • written 4.7 years ago by ▴ 50
0
votes
3
replies
1.9k
views
Unable to install ffbase
software error
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
5
votes
4
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2.7k
views
DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
deseq2 software error
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 10
1
vote
6
replies
3.9k
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 4.8 years ago by 1.6k • written 4.8 years ago by • 0
0
votes
0
replies
752
views
Dispersions Error in DEXSEQ
software error
4.8 years ago huck.thornton ▴ 10
0
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3
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1.8k
views
Cant update old packages
software error packages update
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
4
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5
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2.0k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2 install software error
4.8 years ago mja18 ▴ 40
0
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0
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834
views
makeBSseqData problem versions
software error
updated 4.8 years ago by 4.1k • written 4.8 years ago by • 0
0
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0
replies
1.8k
views
In serialize(data, node$con)
software error
4.8 years ago thomas.boegl • 0
1
vote
4
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2.1k
views
Question: org.Hs.eg.db can not be downloaded
software error
4.8 years ago liuzhizheng1996 • 0
0
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0
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849
views
Error in data.frame(ASSIGN = "ASSIGN parameters", version = as.character(utils::packageVersion("ASSIGN")), : arguments imply differing number of …
software error assign
4.8 years ago yueli7 ▴ 20
1
vote
7
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1.8k
views
Question:Error installing BiocManager::install("org.Hs.eg.db") package.
software error
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
6
votes
5
replies
1.3k
views
Security process for Bioconductor
software error
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
0
votes
2
replies
26k
views
Installing EnhancedVolcano package in R
microarray software error
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
votes
4
replies
5.5k
views
ggplot2 of PCA
software error ggplot2
updated 4.8 years ago by • 0 • written 4.8 years ago by ▴ 20
4
votes
4
replies
7.9k
views
plotPCA in DESeq2
software error deseq2
4.8 years ago yueli7 ▴ 20
5
votes
11
replies
2.2k
views
Rsubread: change in behavior when accepting mixed paired end and single end files
software error Rsubread
updated 4.8 years ago by 52k • written 4.9 years ago by • 0
2
votes
20
replies
3.6k
views
plotPCA in DESeq2
software error deseq2
4.9 years ago yueli7 ▴ 20
2
votes
2
replies
1.3k
views
biomart webservice error when using data from Phytozome
software error go
4.9 years ago e.lopez-cortegano • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
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