Bioconductor Snps

Showing : snps • reset

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3.1k

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snps VCF

updated 2.7 years ago by Arafat • 0 • written 7.9 years ago by rkdonthu ▴ 10

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766

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hierClust R SNPs clustering

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by sekhwal • 0

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1.1k

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SNPs

5.8 years ago pltbiotech_tkarthi • 0

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1.4k

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snps vcf venn diagram ggplot2

6.1 years ago mictadlo ▴ 10

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1.4k

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bioconductor molecular biology snps

updated 6.2 years ago by James W. MacDonald 67k • written 6.2 years ago by jebreen20 • 0

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2.9k

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motifbreakR vcf snps motif analysis

updated 6.6 years ago by Valerie Obenchain ★ 6.8k • written 6.6 years ago by svlachavas ▴ 840

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1.7k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.6 years ago by Valerie Obenchain ★ 6.8k • written 7.6 years ago by Lna • 0

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1.6k

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hsapiens snps indels

updated 9.2 years ago by Hervé Pagès 16k • written 9.2 years ago by kredens • 0

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1.7k

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Biostrings SNPs alignment

updated 9.5 years ago by Hervé Pagès 16k • written 9.5 years ago by ben.ward ▴ 30

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2.1k

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gviz ideogram snps

updated 10.0 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.0 years ago by vnyirongo • 0

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2.5k

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overlap snps granges iranges

updated 10.3 years ago by Michael Lawrence ★ 11k • written 10.3 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0