Bioconductor Snps

Showing : snps • reset

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3.2k

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snps VCF

updated 2.8 years ago by Arafat • 0 • written 8.0 years ago by rkdonthu ▴ 10

votes

789

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hierClust R SNPs clustering

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by sekhwal • 0

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1.2k

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SNPs

5.9 years ago pltbiotech_tkarthi • 0

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1.4k

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snps vcf venn diagram ggplot2

6.2 years ago mictadlo ▴ 10

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1.5k

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bioconductor molecular biology snps

updated 6.3 years ago by James W. MacDonald 68k • written 6.3 years ago by jebreen20 • 0

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3.0k

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motifbreakR vcf snps motif analysis

updated 6.7 years ago by Valerie Obenchain ★ 6.8k • written 6.7 years ago by svlachavas ▴ 840

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1.7k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.7 years ago by Valerie Obenchain ★ 6.8k • written 7.7 years ago by Lna • 0

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1.6k

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hsapiens snps indels

updated 9.2 years ago by Hervé Pagès 16k • written 9.3 years ago by kredens • 0

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1.8k

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Biostrings SNPs alignment

updated 9.6 years ago by Hervé Pagès 16k • written 9.6 years ago by ben.ward ▴ 30

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2.1k

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gviz ideogram snps

updated 10.1 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.1 years ago by vnyirongo • 0

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2.5k

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overlap snps granges iranges

updated 10.4 years ago by Michael Lawrence ★ 11k • written 10.4 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Answer: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

I strongly recommend to not concern yourself with these sorts of marginal problems because you're entering a realm in which you're entirely…

Comment: Problem using locateVariants() from the VariantAnnotation package by Marco • 0

Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …

Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

Awards • All

Popular Question to Matthew McCormack ▴ 180

Popular Question to James W. MacDonald 68k