Bioconductor Snps

Showing : snps • reset

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3.3k

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snps VCF

updated 3.0 years ago by Arafat • 0 • written 8.2 years ago by rkdonthu ▴ 10

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817

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hierClust R SNPs clustering

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by sekhwal • 0

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1.2k

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SNPs

6.1 years ago pltbiotech_tkarthi • 0

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1.5k

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snps vcf venn diagram ggplot2

6.3 years ago mictadlo ▴ 10

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1.5k

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bioconductor molecular biology snps

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by jebreen20 • 0

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3.0k

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motifbreakR vcf snps motif analysis

updated 6.9 years ago by Valerie Obenchain ★ 6.8k • written 6.9 years ago by svlachavas ▴ 840

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1.8k

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variantannotation SNPs txdb.hsapiens.ucsc.hg19.knowngene ucsc

updated 7.9 years ago by Valerie Obenchain ★ 6.8k • written 7.9 years ago by Lna • 0

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1.7k

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hsapiens snps indels

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by kredens • 0

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1.9k

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Biostrings SNPs alignment

updated 9.8 years ago by Hervé Pagès 16k • written 9.8 years ago by ben.ward ▴ 30

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2.2k

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gviz ideogram snps

updated 10.3 years ago by florian.hahne@novartis.com ★ 1.6k • written 10.3 years ago by vnyirongo • 0

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2.5k

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overlap snps granges iranges

updated 10.6 years ago by Michael Lawrence ★ 11k • written 10.6 years ago by anastasiya-terskih ▴ 10

11 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Great Question to inzirio ▴ 10