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Showing :
snps
•
reset
1
vote
2
replies
2.7k
views
Any tool to calculate Fst on haploid data?
snps
VCF
updated 2.2 years ago by
Arafat
• 0 • written 7.4 years ago by
rkdonthu
▴ 10
0
votes
1
reply
631
views
Error running hierClust
hierClust
R
SNPs
clustering
updated 2.3 years ago by
James W. MacDonald
66k • written 2.3 years ago by
sekhwal
• 0
0
votes
0
replies
909
views
How to extract genomic positions of SNPs using snp-sites or using any R package?
SNPs
5.3 years ago
pltbiotech_tkarthi
• 0
0
votes
0
replies
1.3k
views
vcf to venn diagram
snps
vcf
venn diagram
ggplot2
5.5 years ago
mictadlo
▴ 10
0
votes
6
replies
1.2k
views
Physical position to gene positions
bioconductor
molecular biology
snps
updated 5.6 years ago by
James W. MacDonald
66k • written 5.6 years ago by
jebreen20
• 0
2
votes
5
replies
2.6k
views
Error with R package motifbreakR while trying to read a vcf file with snps.from.file function
motifbreakR
vcf
snps
motif analysis
updated 6.0 years ago by
Valerie Obenchain
★ 6.8k • written 6.0 years ago by
svlachavas
▴ 830
3
votes
4
replies
1.4k
views
No annotation for single SNPs
variantannotation
SNPs
txdb.hsapiens.ucsc.hg19.knowngene
ucsc
updated 7.0 years ago by
Valerie Obenchain
★ 6.8k • written 7.0 years ago by
Lna
• 0
0
votes
1
reply
1.5k
views
Extract SNPs and INDELs
hsapiens
snps
indels
updated 8.6 years ago by
Hervé Pagès
16k • written 8.6 years ago by
kredens
• 0
0
votes
1
reply
1.5k
views
Counting SNPs where ambiguity codes represent heterozygosity.
Biostrings
SNPs
alignment
updated 8.9 years ago by
Hervé Pagès
16k • written 9.0 years ago by
ben.ward
▴ 30
0
votes
4
replies
1.9k
views
Marking and annotating several SNPs on Ideogram track by Gviz package.
gviz
ideogram
snps
updated 9.4 years ago by
florian.hahne@novartis.com
★ 1.6k • written 9.4 years ago by
vnyirongo
• 0
4
votes
3
replies
2.2k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.7 years ago by
Michael Lawrence
★ 11k • written 9.7 years ago by
anastasiya-terskih
▴ 10
11 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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Wageningen University, Wageningen, the Netherlands,
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