Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
snprelate
•
reset
0
votes
0
replies
703
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
2.4 years ago
m610110001
• 0
0
votes
2
replies
1.3k
views
How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 3.1 years ago by
Stephanie M. Gogarten
▴ 890 • written 3.1 years ago by
MatthaeusCaesar
• 0
0
votes
1
reply
1.6k
views
SNP annotation
SNPRelate
SNP
GWASTools
Annotation
GWASdata
updated 3.2 years ago by
Stephanie M. Gogarten
▴ 890 • written 3.4 years ago by
Adrián
• 0
0
votes
0
replies
1.2k
views
SNPRelate handling of missing genotypes
SNPRelate
3.2 years ago
serpalma.v
▴ 60
0
votes
0
replies
964
views
#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate
gdsfmt
SeqSQC
3.5 years ago
Bhargavi
• 0
0
votes
1
reply
1.3k
views
error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 4.3 years ago by
xiuwen.zheng
• 0 • written 4.3 years ago by
alyssahz
• 0
3
votes
1
reply
1.4k
views
How to add colors to the PCA made using SNPRelate
snprelate
updated 4.5 years ago by
James W. MacDonald
68k • written 4.5 years ago by
zen
• 0
1
vote
1
reply
1.0k
views
What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 5.8 years ago by
zhengx
▴ 30 • written 5.8 years ago by
grp2009
• 0
0
votes
1
reply
1.2k
views
Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.9 years ago by
zhengx
▴ 30 • written 5.9 years ago by
serpalma.v
▴ 60
1
vote
1
reply
2.0k
views
VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate
VCF
updated 6.0 years ago by
Stephanie M. Gogarten
▴ 890 • written 6.0 years ago by
cav3gh
• 0
1
vote
1
reply
1.2k
views
PCA axis description SNPRelate
SNPRelate
PCA
updated 6.0 years ago by
Stephanie M. Gogarten
▴ 890 • written 6.0 years ago by
serpalma.v
▴ 60
0
votes
1
reply
4.4k
views
SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate
fst
updated 6.5 years ago by
zhengx
▴ 30 • written 6.5 years ago by
cav3gh
• 0
0
votes
1
reply
1.1k
views
Using previously calculated PCs in GENESIS
genesis
snprelate
6.5 years ago
Stephanie M. Gogarten
▴ 890
0
votes
1
reply
1.6k
views
Write gds in parallel
gds
SNPRelate
BiocParallel
updated 6.9 years ago by
zhengx
▴ 30 • written 6.9 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
2.0k
views
Error converting vcf to gds
snprelate
vcf
gds
updated 7.0 years ago by
zhengx
▴ 30 • written 7.0 years ago by
annat22
• 0
1
vote
2
replies
2.0k
views
Cannot read plink files correctly
snprelate
Tutorial
updated 7.9 years ago by
zhengx
▴ 30 • written 7.9 years ago by
AR3513
• 0
0
votes
1
reply
1.8k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate
R
updated 8.8 years ago by
zhengx
▴ 30 • written 8.8 years ago by
rfriedman22
• 0
3
votes
2
replies
2.1k
views
Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate
GWASTools
updated 8.9 years ago by
Adrienne Stilp
▴ 30 • written 8.9 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
9
replies
7.0k
views
unable to update mgcv package
mgcv
snprelate
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
mail2vignesh1985
• 0
0
votes
4
replies
2.8k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 9.4 years ago by
zhengx
▴ 30 • written 9.4 years ago by
blackgore
▴ 10
0
votes
0
replies
1.1k
views
RADseq chromosomes unknown
snprelate
RADseq
Stacks
9.4 years ago
clive.darwell
• 0
0
votes
0
replies
2.1k
views
GWASTools
Organism
GWASTools
Organism
GWASTools
SNPRelate
12.1 years ago
Stephanie M. Gogarten
▴ 890
22 results • Page
1 of 1
Recent ...
Replies
Answer: how to use `arrayWeightsQuick()`?
by
Gordon Smyth
52k
Yes, that is the correct way to use `arrayWeightsQuick`. Thanks for pointing out that there is still a reference to `arrayWeightsSimple` i…
Answer: fast apply on RleList
by
story.benjamin
▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList
by
story.benjamin
▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList
by
James W. MacDonald
68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation
by
James W. MacDonald
68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Votes
Having Trouble Using CNE12() and CNE21() in CNEr
Answer: Having Trouble Using CNE12() and CNE21() in CNEr
annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Awards
• All
Popular Question
to
Ariel Chernomoretz
▴ 170
Popular Question
to
Shaimaa Gamal
• 0
Scholar
to
story.benjamin
▴ 20
Popular Question
to
Seymoo
• 0
Popular Question
to
pouryany
• 0
Locations
• All
Hong Kong,
just now
WEHI, Melbourne, Australia,
34 minutes ago
United States,
49 minutes ago
Pakistan,
50 minutes ago
Australia,
1 hour ago
Traffic: 721 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6