Showing : snprelate • reset
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Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP ExomeSeqData snapcount SNAData SNPRelate
2.2 years ago m610110001 • 0
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2
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1.2k
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How to project a new vector onto PCA space using snpgdsPCA( )?
SNPRelate
updated 2.8 years ago by ▴ 870 • written 2.8 years ago by • 0
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1
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1.4k
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SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.9 years ago by ▴ 870 • written 3.1 years ago by • 0
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1.1k
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SNPRelate handling of missing genotypes
SNPRelate
2.9 years ago serpalma.v ▴ 60
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881
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#SeqSQC error: Problem while converting vcf format to gds format
SNPRelate gdsfmt SeqSQC
3.2 years ago Bhargavi • 0
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1
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1.2k
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error when running snpgdsLDpruning: The GDS node "genotype/data" does not exist.
SNPRelate
updated 4.0 years ago by • 0 • written 4.0 years ago by • 0
3
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1
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1.3k
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How to add colors to the PCA made using SNPRelate
snprelate
updated 4.3 years ago by 67k • written 4.3 years ago by • 0
1
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1
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979
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What does SNPRelate::snpgdsDiss calculate?
SNPRelate
updated 5.5 years ago by ▴ 30 • written 5.5 years ago by • 0
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1
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1.1k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by ▴ 60
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1
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1.9k
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VCF file does not include snp.id, can I still run SNPRelate for Relatedness Analysis? Data is output from STACKS for mangroves
SNPRelate VCF
updated 5.7 years ago by ▴ 870 • written 5.7 years ago by • 0
1
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1
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1.2k
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PCA axis description SNPRelate
SNPRelate PCA
updated 5.8 years ago by ▴ 870 • written 5.8 years ago by ▴ 60
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1
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4.2k
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst
updated 6.2 years ago by ▴ 30 • written 6.2 years ago by • 0
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1
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1.1k
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Using previously calculated PCs in GENESIS
genesis snprelate
6.3 years ago Stephanie M. Gogarten ▴ 870
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1
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1.5k
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Write gds in parallel
gds SNPRelate BiocParallel
updated 6.7 years ago by ▴ 30 • written 6.7 years ago by ▴ 40
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2
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1.8k
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Error converting vcf to gds
snprelate vcf gds
updated 6.7 years ago by ▴ 30 • written 6.8 years ago by • 0
1
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2
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1.9k
views
Cannot read plink files correctly
snprelate Tutorial
updated 7.6 years ago by ▴ 30 • written 7.6 years ago by • 0
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1
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1.7k
views
SNPRelate Dendrogram Point Colors and Shapes
SNPRelate R
updated 8.5 years ago by ▴ 30 • written 8.5 years ago by • 0
3
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2
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2.0k
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Minimum allele frequency (MAF) from a Genomic Data Structure (GDS) file
snprelate GWASTools
updated 8.6 years ago by ▴ 30 • written 8.6 years ago by ▴ 40
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9
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6.8k
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unable to update mgcv package
mgcv snprelate
updated 9.0 years ago by 25k • written 9.0 years ago by • 0
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4
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2.7k
views
NA values in snpgdsDiss dissimilarity matrix
snprelate
updated 9.1 years ago by ▴ 30 • written 9.1 years ago by ▴ 10
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0
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1.1k
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RADseq chromosomes unknown
snprelate RADseq Stacks
9.1 years ago clive.darwell • 0
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2.1k
views
GWASTools
Organism GWASTools Organism GWASTools SNPRelate
11.8 years ago Stephanie M. Gogarten ▴ 870
22 results • Page 1 of 1
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Replies
Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0
Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…
Answer: combining raw counts and estimated counts by O'Brien • 0
It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…
Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0
This is useful information.
Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0
Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…
Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0
Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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