Bioconductor Smart-seq2

Showing : smart-seq2 • reset

1

vote

2

replies

802

views

GenomicAlignments summarizeOverlaps( Smart-seq2 proteinvariantcounting

8 weeks ago SofieK • 0

2

votes

3

replies

1.8k

views

smart-seq2 scRNAseq scran

22 months ago Lluís Revilla Sancho ▴ 760

6

votes

3

replies

3.8k

views

tximport Seurat Smart-Seq Smart-Seq2

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by lshepard ▴ 40

3 results • Page 1 of 1

Recent ...

Replies

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Perhaps edgeR's upperquartile normalization handles this better, the MA looks a lot more centered at 0 ![enter image description here][1]…

Answer: DESeq2 - am I extracting results incorrectly? by James W. MacDonald 68k

If I assume that Followup gets converted to T3 and Treatment to LowSug somewhere along the line (and therefore GroupTreatment.Followup is G…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

I noticed the dual populations as well, when using csaw this is controlled for. Regarding the DE profile, given this disease condition we e…

Answer: Origin of the labels for the SingleCellMultiModal dataset by ATpoint ★ 4.8k

If you check the underlying code a bit you find that there is a file with data sources: ```r modes_file <- system.file("extdata", "metadat…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by ATpoint ★ 4.8k

That plot looks extremely worrying. You have very unbalanced DE profiles and clearly two populations of peaks on the right. I would make su…

Votes

Comment: DESeq - help with pair wise comparisons

Answer: SingleR with multiple single cell references

Awards • All