Bioconductor Single-cell analysis

Showing : single-cell analysis • reset

0

votes

0

replies

856

views

multi-omics imaging single-cell analysis Job

5.4 years ago Wolfgang Huber ★ 13k

1 result • Page 1 of 1

Recent ...

Replies

Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

You are an absolute lifesaver, thank you so much for the clarification!

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Votes

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Awards • All

Popular Question to Talip ▴ 10

Popular Question to alexandre.blais ▴ 50

Popular Question to Fred Hutch (Recruiting) ▴ 40

Locations • All

France, 8 minutes ago

United States, 13 minutes ago

United States, 35 minutes ago

Denmark, 40 minutes ago

Miami Shores, FL, 42 minutes ago

Traffic: 853 users visited in the last hour

Content Search
Users
Tags
Badges

Help About
FAQ

Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the

version 2.3.6