Bioconductor Single cells

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batch effect single cells mnnCorrect scran

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by xingxd16 ▴ 20

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DropletUtils 10X 5` TCR single cells

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by xingxd16 ▴ 20

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Answer: nightmare to make custom txdb for genomes from ToxoDB by Hervé Pagès 16k

Is this for genome assembly TGA4? https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000006565.2/ If that's the case then: ``` library(t…

Answer: nightmare to make custom txdb for genomes from ToxoDB by James W. MacDonald 67k

Your post title is misleading. You have no problem whatsoever generating the `TxDb`, the problem is using it with `gDNAx`, which attempts t…

Answer: Normalizing batch effects using technical replicates for DGE analysis between tw by Gordon Smyth 52k

Just fit a model `~condition + experiment` where `condition` has three levels A, B and C. Ideally, use limma and include duplicate correlat…

Comment: Error in get_anno_data(ontology) : ontology not supported yet... by GODseeker • 0

thank u so much ,god bless u,my dear friend.

Comment: Feature Counts - potential bug with outfile.jcounts by chris2.a.white • 0

Hi @gordonsmyth and @weishi, Firstly, thank you for offering your time to develop the junction quantification module further. This is gre…

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Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

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