Bioconductor Single

Showing : single • reset

vote

replies

3.2k

views

single GenomeInfoDb

updated 23 months ago by Yichao • 0 • written 2.8 years ago by Francesco Monticolo • 0

vote

1.4k

views

scran single cell

updated 3.0 years ago by Aaron Lun ★ 28k • written 3.0 years ago by hemantcnaik • 0

votes

replies

4.7k

views

edgeR single scRNAseq

3.3 years ago • updated 3.2 years ago mbenegas ▴ 10

votes

replies

3.2k

views

scater single SingleCellExperiment

updated 3.0 years ago by Aaron Lun ★ 28k • written 4.0 years ago by p.joshi ▴ 40

votes

1.4k

views

limma custom diagnostic plots single

updated 9.2 years ago by Gordon Smyth 51k • written 9.2 years ago by dario.veneziano • 0

votes

replies

2.0k

views

limma single genepix normalization technical

9.2 years ago dario.veneziano • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by Paul • 0

Unfortunately I've updated my code with the newest GRCm39 genome, and yet I am still getting the same error.... Is there anything else I ca…

Comment: WGCNA with TPM tables by ATpoint ★ 4.5k

WGCNA is not a Bioconductor package, but generally: If you want to do serious analysis then find the raw data. There is no guarantee what …

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k

The `EnsDb.Mmusculus.v79` package is mm38, not mm39. If you want a current `EnsDb`, use `AnnotationHub` ``` > library(AnnotationHub) >…

Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

I'm adding my comment to the threaded section ... I don't have any suggestions here but whatever method you're using is not appropriate up…

Comment: ANOVA like approach of edgeR by Yunshun Chen ▴ 880

If you do it this way, the dispersion estimates would be much higher than they should (as the cell type difference is not accounted for in …

Votes

Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (

Comment: does anyone how to create rarefaction curves from a phyloseq object?

Answer: ANOVA like approach of edgeR

A: ANOVA-like test with edgeR

Answer: CleanUpRNAseq with a GTF that is missing mitochondria annotation data

Awards • All