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single GenomeInfoDb

updated 2.1 years ago by Yichao • 0 • written 3.0 years ago by Francesco Monticolo • 0

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scran single cell

updated 3.2 years ago by Aaron Lun ★ 28k • written 3.2 years ago by hemantcnaik • 0

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edgeR single scRNAseq

3.5 years ago • updated 3.4 years ago mbenegas ▴ 10

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scater single SingleCellExperiment

updated 3.2 years ago by Aaron Lun ★ 28k • written 4.2 years ago by p.joshi ▴ 40

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limma custom diagnostic plots single

updated 9.3 years ago by Gordon Smyth 52k • written 9.3 years ago by dario.veneziano • 0

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limma single genepix normalization technical

9.3 years ago dario.veneziano • 0

6 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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