Bioconductor Simplesinglecell

Showing : simplesinglecell • reset

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2.3k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.2 years ago by Aaron Lun ★ 28k • written 5.3 years ago by C T ▴ 140

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1.5k

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simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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842

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simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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5.0k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.4 years ago by Stefano Mangiola ▴ 20 • written 5.4 years ago by shbrief ▴ 20

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1.9k

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scran simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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3.2k

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limma edgeR simplesingleCell scran scater

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Bogdan ▴ 670

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1.9k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Matt Mulé • 0

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Steve Pederson ▴ 170

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2.9k

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singlecellexperiment dropletutils simplesinglecell

updated 6.2 years ago by Aaron Lun ★ 28k • written 6.2 years ago by Peter Hickey ▴ 740

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1.0k

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workflows simplesinglecell

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 6.8 years ago by Aaron Lun ★ 28k • written 6.8 years ago by Xingyu • 0

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2.0k

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scater singlecellexperiment simplesinglecell

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by Xingyu • 0

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3.6k

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scater simpleSingleCell workflows

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: Any tools to convert .gff to .gtf format by ControlF5 • 0

Yes, the Appsierra team recently built a tool to convert .gff to .gtf format. [ControlF5][1] is providing the best software testing service…

Comment: EuroBioC2024 abstract submission is open! by Alan Downey • 0

EuroBioC2024 has opened its abstract submission process, presenting an exciting opportunity for researchers to contribute to groundbreaking…

Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

@[sandtrix][1] This is useful information. [1]: https://sandtrix.io

Votes

A: GWAS analysis with Illumina HumanOmni5-4 BeadChip - recommended software and wor

A: RNA-seq Normalisation - normalise all samples in experiment or only the ones use

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

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