Bioconductor Simplesinglecell

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.5 years ago by Aaron Lun ★ 28k • written 5.7 years ago by C T ▴ 140

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1.6k

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simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

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905

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simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

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5.2k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.7 years ago by Stefano Mangiola ▴ 40 • written 5.7 years ago by shbrief ▴ 20

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2.1k

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scran simpleSingleCell

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Angelos Armen • 0

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3.4k

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limma edgeR simplesingleCell scran scater

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Bogdan ▴ 670

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2.1k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Matt Mulé • 0

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2.0k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Steve Pederson ▴ 170

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3.4k

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singlecellexperiment dropletutils simplesinglecell

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Peter Hickey ▴ 750

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1.1k

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workflows simplesinglecell

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by es.azadian • 0

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1.2k

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simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Xingyu • 0

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scater singlecellexperiment simplesinglecell

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Xingyu • 0

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3.9k

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scater simpleSingleCell workflows

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

Awards • All

Great Question to inzirio ▴ 10