Bioconductor Simplesinglecell

Showing : simplesinglecell • reset

votes

replies

2.5k

views

DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.5 years ago by Aaron Lun ★ 28k • written 5.6 years ago by C T ▴ 140

votes

replies

1.6k

views

simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

vote

896

views

simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

votes

5.2k

views

DropletUtils EmptyDrops simpleSingleCell

updated 2.7 years ago by Stefano Mangiola ▴ 40 • written 5.7 years ago by shbrief ▴ 20

vote

replies

2.1k

views

scran simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

votes

replies

3.3k

views

limma edgeR simplesingleCell scran scater

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Bogdan ▴ 670

votes

replies

2.1k

views

SingleCellExperiment scran limma simpleSingleCell

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Matt Mulé • 0

vote

replies

2.0k

views

DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Steve Pederson ▴ 170

votes

replies

3.3k

views

singlecellexperiment dropletutils simplesinglecell

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Peter Hickey ▴ 750

votes

1.1k

views

workflows simplesinglecell

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by es.azadian • 0

votes

1.1k

views

simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Xingyu • 0

vote

replies

2.1k

views

scater singlecellexperiment simplesinglecell

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Xingyu • 0

votes

replies

3.9k

views

scater simpleSingleCell workflows

updated 7.8 years ago by Aaron Lun ★ 28k • written 7.8 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

Recent ...

Replies

Answer: fast apply on RleList by story.benjamin ▴ 20

solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…

Comment: fast apply on RleList by story.benjamin ▴ 20

Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…

Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

Votes

Answer: fast apply on RleList

Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

Awards • All

Scholar to story.benjamin ▴ 20