Bioconductor SimplesingleCell

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.3 years ago by Aaron Lun ★ 28k • written 5.4 years ago by C T ▴ 140

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1.5k

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simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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852

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simpleSingleCell

updated 5.4 years ago by Aaron Lun ★ 28k • written 5.4 years ago by Angelos Armen • 0

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5.0k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.5 years ago by Stefano Mangiola ▴ 20 • written 5.5 years ago by shbrief ▴ 20

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scran simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Angelos Armen • 0

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3.2k

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limma edgeR simplesingleCell scran scater

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Bogdan ▴ 670

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1.9k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Matt Mulé • 0

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Steve Pederson ▴ 170

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3.0k

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singlecellexperiment dropletutils simplesinglecell

updated 6.3 years ago by Aaron Lun ★ 28k • written 6.3 years ago by Peter Hickey ▴ 750

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1.1k

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workflows simplesinglecell

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by Xingyu • 0

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2.0k

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scater singlecellexperiment simplesinglecell

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by Xingyu • 0

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3.7k

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scater simpleSingleCell workflows

updated 7.6 years ago by Aaron Lun ★ 28k • written 7.6 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

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Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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