Bioconductor SimplesingleCell

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.4 years ago by Aaron Lun ★ 28k • written 5.5 years ago by C T ▴ 140

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1.5k

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simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Angelos Armen • 0

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875

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simpleSingleCell

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Angelos Armen • 0

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5.1k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.6 years ago by Stefano Mangiola ▴ 40 • written 5.6 years ago by shbrief ▴ 20

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scran simpleSingleCell

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Angelos Armen • 0

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3.2k

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limma edgeR simplesingleCell scran scater

updated 5.6 years ago by Aaron Lun ★ 28k • written 5.6 years ago by Bogdan ▴ 670

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2.0k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Matt Mulé • 0

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1.9k

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Steve Pederson ▴ 170

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3.1k

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singlecellexperiment dropletutils simplesinglecell

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by Peter Hickey ▴ 750

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1.1k

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workflows simplesinglecell

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by Xingyu • 0

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2.1k

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scater singlecellexperiment simplesinglecell

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by Xingyu • 0

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3.7k

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scater simpleSingleCell workflows

updated 7.7 years ago by Aaron Lun ★ 28k • written 7.7 years ago by sandmann.t ▴ 70

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Comment: Conumee for EPIC and EPICv2 copy number by Adam • 0

As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …

Comment: graper 1.22 Build is Broken by shepherl 4.1k

This post does not fit the theme of this forum.

Comment: Unbalanced experiment with multiple samples from each patient. by canarias • 0

Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…

Comment: Gene Set Enrichment Analysis in Bioconductor course by info ▴ 10

If you are interested in Gene Set Enrichment Analysis in R, you can still join us next week for this 4-day Physalia course on GSEA in R and…

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A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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