Bioconductor SimpleSingleCell

Showing : simpleSingleCell • reset

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2.6k

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 4.5 years ago by Aaron Lun ★ 28k • written 5.7 years ago by C T ▴ 140

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1.6k

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simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

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903

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simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by Angelos Armen • 0

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5.2k

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DropletUtils EmptyDrops simpleSingleCell

updated 2.7 years ago by Stefano Mangiola ▴ 40 • written 5.7 years ago by shbrief ▴ 20

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2.1k

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scran simpleSingleCell

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Angelos Armen • 0

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3.4k

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limma edgeR simplesingleCell scran scater

updated 5.8 years ago by Aaron Lun ★ 28k • written 5.8 years ago by Bogdan ▴ 670

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2.1k

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SingleCellExperiment scran limma simpleSingleCell

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Matt Mulé • 0

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DropletUtils SingleCellExperiement DelayedArray simpleSingleCell

updated 5.9 years ago by Aaron Lun ★ 28k • written 5.9 years ago by Steve Pederson ▴ 170

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3.4k

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singlecellexperiment dropletutils simplesinglecell

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Peter Hickey ▴ 750

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1.1k

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workflows simplesinglecell

updated 6.6 years ago by Aaron Lun ★ 28k • written 6.6 years ago by es.azadian • 0

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1.1k

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simplesinglecell

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by Xingyu • 0

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2.1k

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scater singlecellexperiment simplesinglecell

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Xingyu • 0

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3.9k

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scater simpleSingleCell workflows

updated 7.9 years ago by Aaron Lun ★ 28k • written 7.9 years ago by sandmann.t ▴ 70

13 results • Page 1 of 1

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Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0

Hi. I am having the same issue, and haven't found a solution still.

Votes

Answer: CluserProfiler message "No gene can be mapped"

A: Minfi issue: return code from pthread_create() is 22

Comment: Filtering after DESeq

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

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