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Comment: Merge Replicates vs Mixed Model
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abadgerw
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Thanks, @gabrielhoffman
The data is actually proteomics so it is intensity data which is why I did not use voom but rather ran ebayes wi…
Comment: ANOVA like approach of edgeR
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Gordon Smyth
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To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …
Comment: DESeq2 sizefactors counfounded with biological treatment
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Anna
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Hi James,
Apologies (re: posting in the wrong place).
Thank you so much for your response, that was exactly the help I needed.
Best,
A…
Comment: ANOVA like approach of edgeR
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Talip
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10
I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…
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