Showing : sgRNA • reset
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Using edgeR to analyze Cripsr/Cas9 Screening data
edger processamplicons sgrna crispr
updated 22 months ago by • 0 • written 6.8 years ago by ★ 1.5k
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932
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using the edgeR for sgRNA workflow with my own data
edger sgrna processamplicons
6.8 years ago Assa Yeroslaviz ★ 1.5k
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1
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1.5k
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CRISPRseek R package: description of output fields that are unclear
crisprseek R CRISPR sgRNA
updated 8.9 years ago by ★ 4.3k • written 8.9 years ago by ▴ 20
2
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27
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4.6k
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CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek sgrna crispr cas9 R
9.2 years ago • updated 9.1 years ago alexgraehl ▴ 20
4 results • Page 1 of 1
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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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