Bioconductor Sesame

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methylation sesame methylationArrayAnalysis

updated 7 months ago by zhouwanding ▴ 20 • written 7 months ago by ramiro.barrantes ▴ 10

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MethylationArray methylation sesame methylationArrayAnalysis

7 months ago ramiro.barrantes ▴ 10

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MethylationArray sesameData sesame

updated 4 months ago by alyssa-daniel • 0 • written 7 months ago by ramiro.barrantes ▴ 10

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sesame EPICv2manifest epicv2

10 months ago luca.s ▴ 50

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sesame BatchEffect MethylationArray

updated 11 months ago by zhouwanding ▴ 20 • written 11 months ago by Seungmin • 0

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sesame IlluminaHumanMethylationEPICv2anno.20a1.hg38 methylationEPICv2.0 EpicV2

updated 13 months ago by aldea85 • 0 • written 17 months ago by Courtney ▴ 10

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sesameData sesameDataCache sesame ExperimentalHub

updated 6 weeks ago by Samreen • 0 • written 17 months ago by alos_diallo • 0

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sesame sesameData

updated 2.4 years ago by zhouwanding ▴ 20 • written 2.4 years ago by jasmine_chappell • 0

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GenomicRanges sesame sesameData GenomicFeatures

3.6 years ago Pratik Mehta ▴ 10

9 results • Page 1 of 1

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Comment: Differing results with DESeq2 by JKim • 0

I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for gene expressio…

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…

Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k

This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…

Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80

Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…

Answer: Analyzing TnSeq data with DESeq2 by cold.wolverine.arku • 0

That's a great use case of DESeq2! Even though it's not specifically tailored for TnSeq data, your approach to normalize and run explorator…

Votes

A: Unbalanced experiment with multiple samples from each patient.

A: Understanding contrasts limma

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

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