Showing : seqlogo • reset
1
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4
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1.1k
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Error of PWM not colsum to 1 from package DiffLogo or seqLogo
seqLogo DiffLogo
2.2 years ago zhxiaokang ▴ 20
0
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1
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1.4k
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PWM with columns that add up to 1
biostrings seqlogo pwm
updated 8.0 years ago by 700 • written 8.0 years ago by • 0
0
votes
5
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1.8k
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Plotting protein position weighted matrices in seqLogo and DiffLogo
seqlogo DiffLogo
updated 8.3 years ago by • 0 • written 8.3 years ago by • 0
0
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0
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882
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Change chars ACGT to ACGU in seqLogo
seqLogo seqLogo
10.9 years ago Fabrice Tourre ▴ 970
0
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0
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919
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cosmo for particular sequences
seqLogo seqLogo
12.2 years ago Guest User ★ 13k
0
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0
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1.4k
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seqLogo package: sequence logo graph with background frequency?
seqLogo seqLogo
12.9 years ago Tim Smith ★ 1.1k
3
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3
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2.7k
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Drawing multiple sequence logos with seqLogo?
graph seqLogo graph seqLogo
14.2 years ago Nenad Bartonicek ▴ 80
7 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
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